PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G0273

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 193aa MW: 21870.6 Da PI: 4.51

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G0273	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.7	4.7e-21	5	46	4	45
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + +s rqvtfskRrng++KKA+E++ LC+a++ +i+fs++gk Gh_A12G0273 5 QKESSRQVTFSKRRNGLFKKASEICLLCGANIGIIVFSPKGK 46 56899***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.88E-24	1	65	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	21.586	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.5E-24	1	53	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.67E-31	1	62	No hit	No description
Pfam	PF00319	7.1E-23	5	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.5E-10	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.5E-10	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MKKLQKESSR QVTFSKRRNG LFKKASEICL LCGANIGIIV FSPKGKPFIF GHPNIETILD 60 RYFSGSLAMD DYENDSATTE TSLCFQELYD ECEEALEKLK EEKKRIEHTK EAMKNKGEFW 120 WDEAIDDNMG LEELEAYLKA IEELRNNVAR KANESMMCDV VADSGGYFDF GIAADAFNFD 180 HCPSQDFGAA GQL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016706633.1	1e-142	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A1U8KZX1	1e-141	A0A1U8KZX1_GOSHI; agamous-like MADS-box protein AGL61
STRING	EOX97245	2e-66	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35437	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	3e-36	AGAMOUS-like 61