PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0404
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 242aa    MW: 27479.5 Da    PI: 9.1119
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0404genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer69.55.7e-2278125456
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 
                  +rYkeC++NhAas+G +a+DGCg f+       + + + CaACgCHR+FHR++
  Gh_A12G0404  78 CRYKECRRNHAASIGRYAIDGCGGFICC-----KDDLFMCAACGCHRSFHRKD 125
                  89*************************8.....34689*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-1068125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.9E-1778125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-1779125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.21580125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.8E-21171239IPR009057Homeodomain-like
SuperFamilySSF466891.01E-13171239IPR009057Homeodomain-like
PROSITE profilePS500719.28176240IPR001356Homeobox domain
TIGRFAMsTIGR015651.1E-19180234IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MQFFPFKEQF HLPNHPTNTA LLIINSLSLS RSLSISLSLM EGETSNVVIK VEAESDVEPI  60
SVQRCCSLVS DQSNERICRY KECRRNHAAS IGRYAIDGCG GFICCKDDLF MCAACGCHRS  120
FHRKDYLPPP PQPKLMPSCL APWPLASHNG LTGETSLFVK DRNNTVAGPG AEEQNTNKEA  180
KRTRLTVEQK NKMMRFADKL GWRSQKHDDA EIRQFCEQVG ITKRMFVVWL NNNRRRSRKG  240
SK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-151822342173ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5880261e-104JX588026.1 Gossypium hirsutum clone NBRI_GE22331 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435639.11e-167PREDICTED: zinc-finger homeodomain protein 6-like
TrEMBLA0A0D2R9741e-166A0A0D2R974_GOSRA; Uncharacterized protein
STRINGGorai.008G044700.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1866867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-30homeobox protein 22