PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0601
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 614aa    MW: 67508 Da    PI: 4.9738
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0601genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.51.5e-1112476142374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   +++l+cA+ +s+++ e+a + L +l+e +s++gdp++R+a+yft+AL ++++       k l+  et+   s++ + ++k++++++P+ kf+hltaN
  Gh_A12G0601 247 LKAVLDCAR-LSDSEPERAIKSLVELRESVSERGDPTERVAFYFTQALYSKVSL---PAEKRLNLLETT---SEDFTLSYKVLNDACPYSKFAHLTAN 337
                  578899**9.677799999999******************************98...677788888888...89999********************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  qaIlea+e+++++H++Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p  g   + +l + g+rL++fA+ l+++fef++ + + +++l+ + +
  Gh_A12G0601 338 QAILEATERATKIHVVDFGIVQGVQWAALLQALATRSAGKPtRIRISGIPAPVLGssPAPSLYASGNRLRDFAKLLDLNFEFEP-ILTPIKELKESCF 434
                  *************************************77666*********999888999************************.799********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  rv+ +E+laVn++lql++lld +  + +   + L+l ksl+Pk+v++ e ea++n+  F++rf +al+yysa+f+sle +lpr+s er+ vEr+llg 
  Gh_A12G0601 435 RVDDDEVLAVNFMLQLYNLLDATPVTVE---AALRLAKSLNPKIVTLGEYEASLNRVGFVNRFKNALRYYSAVFESLEPNLPRDSPERVEVERQLLGG 529
                  ********************88777777...9****************************************************************** PP

         GRAS 293 eivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  +i  ++ +e+ae rrer+e +e+W+  +e+aGF++v+ls++a +qak ll +++ s  y++ e++  ++ l Wk+ pL++vS+Wr
  Gh_A12G0601 530 KIGAIIGAEEAEkRRERMEDKEQWKVLMESAGFETVSLSHYAISQAKILLWNYNySSSYSLIESKPGFLsLAWKEVPLLTVSSWR 614
                  ******9999888*****************************************9999*99988888777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.961220592IPR005202Transcription factor GRAS
PfamPF035145.3E-109247614IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QQQQQEQQQE QHHHQQQQLL GVSHVTLNPW PNNPHHGVSN  60
SPILGYGLSG PGFTDLFQGD TGEGFQFPNM GHHHSSGFRF PDFGGGSGGE FDTDEWMDCL  120
MNSGDSTDSS NLPSGCEVWQ NNADFGLCGA DPFSACPNCL SVACPTPSDL NRVIFPTEAQ  180
KNLSPTLQSQ HQLPTWSPSP SPPPPPPPHV AVKETKASSP PSQTPLTNDA AGVSADSSEI  240
ESAPPLLKAV LDCARLSDSE PERAIKSLVE LRESVSERGD PTERVAFYFT QALYSKVSLP  300
AEKRLNLLET TSEDFTLSYK VLNDACPYSK FAHLTANQAI LEATERATKI HVVDFGIVQG  360
VQWAALLQAL ATRSAGKPTR IRISGIPAPV LGSSPAPSLY ASGNRLRDFA KLLDLNFEFE  420
PILTPIKELK ESCFRVDDDE VLAVNFMLQL YNLLDATPVT VEAALRLAKS LNPKIVTLGE  480
YEASLNRVGF VNRFKNALRY YSAVFESLEP NLPRDSPERV EVERQLLGGK IGAIIGAEEA  540
EKRRERMEDK EQWKVLMESA GFETVSLSHY AISQAKILLW NYNYSSSYSL IESKPGFLSL  600
AWKEVPLLTV SSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1472456143375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.200640.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713166.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_016713175.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_016713183.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A1U8LF220.0A0A1U8LF22_GOSHI; scarecrow-like protein 4
STRINGGorai.008G068100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein