PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G0608

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 381aa MW: 40491.9 Da PI: 6.527

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G0608	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	76.3	4.1e-24	282	344	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ kv++L +eN++L++el++l++e++kl+se+ Gh_A12G0608 282 ERELKRQKRKQSNRESARRSRLRKQAECEELQAKVESLANENHTLRNELKKLSDECEKLTSEN 344 89***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	8.8E-30	38	130	IPR012900	G-box binding protein, multifunctional mosaic region
Gene3D	G3DSA:1.20.5.170	2.4E-20	277	342	No hit	No description
Pfam	PF00170	1.5E-21	282	344	IPR004827	Basic-leucine zipper domain
SMART	SM00338	8.5E-22	282	346	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.38	284	347	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-12	285	341	No hit	No description
CDD	cd14702	1.75E-23	287	337	No hit	No description
PROSITE pattern	PS00036	0	289	304	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MLDGTNYDSW KVLSKSGRGH TDLILDFLKL RRLHKCDMGT EEESTPAKPS KPTASTQEMP 60 TTVSYPDWST QMQAYYGAAA TPPLFASTVA SPTPHPYIWG GQHPLMPPYG TPVPYPAVYP 120 PRGVYAHPNM APMPSSARNN GADGKDRGVT KKPKGSSGSK VGESAKATSG SGNDGGSQSG 180 ESGSEGTSDR SDESNQQEVN AGKKGSFEQM LADANAQGKA AGALVPAEPI VSMPATTLNI 240 GMDLWSASPA ATGAAKTRPN ASGTVATVPA GAMMPDQWIQ DERELKRQKR KQSNRESARR 300 SRLRKQAECE ELQAKVESLA NENHTLRNEL KKLSDECEKL TSENSSIKDE LMRICGPEAI 360 SNLEQGNPSS VGEAGGDEGN G

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MLDGTNYDSW KVLSKSGRGH TDLILDFLKL RRLHKCDMGT EEESTPAKPS KPTASTQEMP  60
TTVSYPDWST QMQAYYGAAA TPPLFASTVA SPTPHPYIWG GQHPLMPPYG TPVPYPAVYP  120
PRGVYAHPNM APMPSSARNN GADGKDRGVT KKPKGSSGSK VGESAKATSG SGNDGGSQSG  180
ESGSEGTSDR SDESNQQEVN AGKKGSFEQM LADANAQGKA AGALVPAEPI VSMPATTLNI  240
GMDLWSASPA ATGAAKTRPN ASGTVATVPA GAMMPDQWIQ DERELKRQKR KQSNRESARR  300
SRLRKQAECE ELQAKVESLA NENHTLRNEL KKLSDECEKL TSENSSIKDE LMRICGPEAI  360
SNLEQGNPSS VGEAGGDEGN G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	298	304	RRSRLRK
2	298	305	RRSRLRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2237	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Found in both light and dark grown leaves.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017634781.1	0.0	PREDICTED: G-box-binding factor 1-like isoform X1
Swissprot	P42774	1e-111	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A1U8LI08	0.0	A0A1U8LI08_GOSHI; G-box-binding factor 1-like
STRING	Gorai.008G068900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7274	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.1	2e-94	G-box binding factor 1

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]