PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G0642

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 364aa MW: 40758.8 Da PI: 6.5227

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G0642	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105	4.5e-33	228	283	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFvea++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Gh_A12G0642 228 KQRRCWSPELHRRFVEALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 283 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-30	225	286	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.019	225	285	IPR017930	Myb domain
SuperFamily	SSF46689	5.92E-19	226	286	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.4E-27	228	283	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-8	230	281	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MEFSLDLSLV YVPKTISEFL KEVSKIKNGF QRLSKITDYL QRLEDEMKKI DAFKRELPLC 60 MLLLKDGIER LKEEEIQCKE MNDGSVTEEN GRETMDNDGG DKKNWMSSVQ LWNSNFNNVD 120 PHNKPNTVPE LKLTSEEGED GSESENPIEI CNKQRKGGAF VPFKEQADKK VSGLSLMTPS 180 SELASCILKN NGGCRIGSGL YAQQNQIKFQ TKSQIRHEEQ PQQQNSRKQR RCWSPELHRR 240 FVEALQQLGG SQVATPKQIR ELMQVDGLTN DEVKSHLQKY RLHIRKLPAS SSGQGNELCS 300 AQNQCNGKMK ASMSQSGSPQ GPLLGSASAK DMSSTGGDSM DTEDENSDGH SWRSGIKKPG 360 EVDV

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MEFSLDLSLV YVPKTISEFL KEVSKIKNGF QRLSKITDYL QRLEDEMKKI DAFKRELPLC  60
MLLLKDGIER LKEEEIQCKE MNDGSVTEEN GRETMDNDGG DKKNWMSSVQ LWNSNFNNVD  120
PHNKPNTVPE LKLTSEEGED GSESENPIEI CNKQRKGGAF VPFKEQADKK VSGLSLMTPS  180
SELASCILKN NGGCRIGSGL YAQQNQIKFQ TKSQIRHEEQ PQQQNSRKQR RCWSPELHRR  240
FVEALQQLGG SQVATPKQIR ELMQVDGLTN DEVKSHLQKY RLHIRKLPAS SSGQGNELCS  300
AQNQCNGKMK ASMSQSGSPQ GPLLGSASAK DMSSTGGDSM DTEDENSDGH SWRSGIKKPG  360
EVDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-15	228	281	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-15	228	281	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-15	228	281	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-15	228	281	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.11877	1e-178	root

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX580318	1e-116	JX580318.1 Gossypium hirsutum clone NBRI_GE12725 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016720850.1	0.0	PREDICTED: uncharacterized protein LOC107933192
TrEMBL	A0A1U8M231	0.0	A0A1U8M231_GOSHI; uncharacterized protein LOC107933192
STRING	Gorai.008G073300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4922	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	3e-70	G2-like family protein