PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G0643

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 296aa MW: 33135.4 Da PI: 6.6691

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G0643	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.4	2.1e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++Cv+apyfp ++p+kf+nvhk++Gasnv kll++l++++re+a++sl+yeAear++dPvyG+vg+i+ lq++l+q++++l +k Gh_A12G0643 7 PCAACKFLRRKCTQECVFAPYFPPDHPQKFQNVHKVYGASNVAKLLNELNPSQREEAVTSLAYEAEARLQDPVYGCVGLISILQHRLKQMQHDLGNAK 104 7********************************************************************************************99888 PP DUF260 99 ee 100 +e Gh_A12G0643 105 KE 106 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.625	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-42	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DHPQKFQNVH KVYGASNVAK LLNELNPSQR 60 EEAVTSLAYE AEARLQDPVY GCVGLISILQ HRLKQMQHDL GNAKKELSTY IGPQALLPIF 120 QPPVFFPQQH LGNPSSMMQH NMMPMMGIPT AASLSHGGQL VIREPQQQQQ QFFEPQQQMA 180 AVVAAREQQD FLRGYEQQQL HHQQQPDMLR FNNSGFEGAG SVTATGFNQI AAMSPSLALG 240 CFDNLYQIQP QEQDHPHHHS HGTLPFQSQL LLQPLQEQPQ VHLRSESEEG TSTGPC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	3	110	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269\|PubMed:15821980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016720859.1	0.0	PREDICTED: LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	4e-83	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A1U8M5R2	0.0	A0A1U8M5R2_GOSHI; LOB domain-containing protein 36-like
TrEMBL	A0A2P5WZP5	0.0	A0A2P5WZP5_GOSBA; Uncharacterized protein
STRING	Gorai.008G073400.1	1e-171	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8008	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-72	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]