PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0696
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 232aa    MW: 25480.1 Da    PI: 8.4235
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0696genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.41.3e-292103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+ avg++++++++++q+++e
  Gh_A12G0696   2 SCNGCRVLRKGCSESCILRPCLqwidgPEAQGHATIFVAKFFGRAGLMSFISAVPESQRSALFQSLLFEACGRTVNPVNRAVGLLWTGNWHVCQAAVE 99 
                  6***********************************************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  Gh_A12G0696 100 TVLR 103
                  8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.4851107IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDGPE AQGHATIFVA KFFGRAGLMS FISAVPESQR  60
SALFQSLLFE ACGRTVNPVN RAVGLLWTGN WHVCQAAVET VLRGGTVRAV PELMAPTPAS  120
DEKSEATTIT YMLKLQETAT KFNSTCRFST SRSKVSPKRI KVEEFSKFQP SDLDLCLTPS  180
STGNRLLDNR RPGTPSLNSE ESVTTTCFES GFADQQRQGG ETDRIKLLNL FV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.28110.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5269089e-46HQ526908.1 Gossypium herbaceum clone NBRI_B_EYI1BW404I2C3E simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016720970.11e-172PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SZE82e-84LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A1U8M2E71e-170A0A1U8M2E7_GOSHI; LOB domain-containing protein 38-like
STRINGGorai.008G081100.11e-161(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.19e-87LOB domain-containing protein 39