PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G0774

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 231aa MW: 25942 Da PI: 8.3862

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G0774	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104	9.9e-33	47	101	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k Y+eClkNhA+ +GghavDGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e+e Gh_A12G0774 47 KRSYRECLKNHAVGIGGHAVDGCGEFMPA-GTEGTLDALKCAACNCHRNFHRKETE 101 678***********************9.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.5E-29	49	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	7.0E-23	50	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.6E-30	50	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.453	50	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	6.9E-30	155	230	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.86E-18	156	229	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.4E-25	168	224	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MEFEEQEEEM GLAPSYNSLV NSTAVKMSAA EPGSITPTGQ QQQQQRKRSY RECLKNHAVG 60 IGGHAVDGCG EFMPAGTEGT LDALKCAACN CHRNFHRKET EPGSPNTFPS TDLYFHQPPQ 120 FTPYFRAPTG YLHVAGQQRL LALPSTSGGG GGHSREDQED VSNQGSSRKR FRTKFTHDQK 180 EKMLELAERI GWRIQKHDEP LVQQFCNENG VKRQVFKVWM HNNKHTLGKK P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	8e-26	169	226	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636480.1	1e-176	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	A2Z259	1e-74	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	2e-74	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A1U8M3J7	1e-173	A0A1U8M3J7_GOSHI; zinc-finger homeodomain protein 2-like
STRING	Gorai.008G092000.1	1e-153	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	4e-73	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]