PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G0948

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ARR-B

Protein Properties

Length: 314aa MW: 35427.6 Da PI: 7.0557

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G0948	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	68.5	1.1e-21	198	250	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kp+l Wt+eLH+rF++a++ L Gse A Pk+il++m+v gL e+v SHLQk+Rl Gh_A12G0948 198 KPKLIWTNELHNRFLQAIDML-GSE-AYPKKILQVMNVTGLRKENVSSHLQKHRL 250 79*****************.665.9*************************7 PP
2	Response_reg	54.2	8.2e-19	18	126	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vd + + + +l ++l++ gy +v +++++++al ++ +++++Dl+l+ + +md +ell++ir+ + ++piiv+++ + + +l l Ga Gh_A12G0948 18 VLLVDGDSTCLIILSKMLRSFGY-KVVTTKQATDALCIIrdQQHKIDLVLMEACLHDMDKYELLETIRNIS-SIPIIVMSTDYDRNSVLGSLFKGAT 112 89*******************.***********555555********************99.********************* PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 +l+Kp+ ++++ + Gh_A12G0948 113 LHLEKPITMDDIKN 126 *******99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	1.8E-24	15	165	No hit	No description
SuperFamily	SSF52172	2.28E-23	15	132	IPR011006	CheY-like superfamily
SMART	SM00448	2.4E-13	16	128	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	28.501	17	132	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	2.5E-14	18	126	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	2.79E-16	19	132	No hit	No description
SuperFamily	SSF46689	1.0E-14	195	254	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-21	197	254	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-19	198	250	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MAISYESNMN NVYAGVTVLL VDGDSTCLII LSKMLRSFGY KVVTTKQATD ALCIIRDQQH 60 KIDLVLMEAC LHDMDKYELL ETIRNISSIP IIVMSTDYDR NSVLGSLFKG ATLHLEKPIT 120 MDDIKNLWQF TLIKGQEINV PIVEAKSCIK EVQSMESALG VVVDGRRNLR DEKRKRPLEV 180 ENDKEGDNCD QGSSTLKKPK LIWTNELHNR FLQAIDMLGS EAYPKKILQV MNVTGLRKEN 240 VSSHLQKHRL LLKRQQEAIQ NTISSTVSQA ASHHALSEFS PRNGFHRFTD TAQTTSVAEQ 300 HGYINDLVQD NLNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	1e-16	197	254	4	62	ARR10-B
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016704436.1	0.0	PREDICTED: two-component response regulator ARR1-like
TrEMBL	A0A1U8KPN2	0.0	A0A1U8KPN2_GOSHI; two-component response regulator ARR1-like
STRING	Gorai.008G116600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17210	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.1	6e-44	response regulator 1