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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_A12G1021 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
Dof |
| Protein Properties |
Length: 272aa MW: 29828.8 Da PI: 8.7403 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A12G1021 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 125.5 | 1.6e-39 | 43 | 103 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
+ ++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss
Gh_A12G1021 43 PPEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 103
57899*****************************************************975 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MDADKWSQGF QVKSMEEMMV ANNNTCTKGT TTTTTVLEKK TRPPEQLNCP RCNSTNTKFC 60
YYNNYSLTQP RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK RSSISTTSSS SSSSSSSSST 120
AFASDSAKVL DLNPSTFSLL SSSQNPNKVH YKGQDLNLTF PPMQEPGLYD HQHNYYYYNN 180
TGMVSRGLNS FVPAPAAPAT PAPAALFSMQ DYKPSLSSTT FPIHSGVQGF PFGEMKQVSS 240
TNNEVDDDQN KEQSNSTGFW NNNGVLGGGG SW
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GQ393560 | 1e-111 | GQ393560.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0525 SSR marker CGR5558 genomic sequence. |
