PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1214

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 243aa MW: 25317.5 Da PI: 10.5174

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1214	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.3	1.1e-37	28	113	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 a k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ + s+ ++ +s + Gh_A12G1214 28 AITKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTMSVSVRGGA-NSTS 113 56899****************************************************************8883333333333.2222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-33	34	120	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	34	88	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MSNSEGGATN GAIMDPQRQQ ATVNGSLAIT KPPSKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST MSVSVRGGAN STSLSSTTAS 120 PSLDHKPLLG PTPFILGKRV RPDDDNPGKY DTGGVMVGPG VVGPAGGFWA IPGRTDFGQL 180 WSFPPPAEMA AHQPAAALFV QQQQAMGEAS AARVGNYLPG HLNLLASLSG APGSSGRRGE 240 DPR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.8300	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016731394.1	1e-175	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	3e-92	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1U8N0P4	1e-174	A0A1U8N0P4_GOSHI; transcription factor TCP7-like
STRING	Gorai.008G147800.1	1e-149	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-66	TCP family protein