PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1236

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 147aa MW: 16605.9 Da PI: 8.3192

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1236	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	42.3	9.7e-14	11	53	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 kr e+ rq+ +sk r+gi+KKA ELSv d+++ +++fs+t Gh_A12G1236 11 KRTEDLCFRQIAYSKCREGIFKKAVELSVFSDTDIGLLLFSPT 53 56788888*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	15.096	3	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.1E-9	3	62	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.15E-13	4	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-7	5	25	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-11	19	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-7	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-7	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MSCRRTRPVM KRTEDLCFRQ IAYSKCREGI FKKAVELSVF SDTDIGLLLF SPTVKPNISY 60 LSSLRNAKLL ENEASTSKLK DAEVSAVEVK DSDFTTEESV NSKRKRNKLE DDEKEEAGSS 120 AVEVPCPTPH LNISFLKTQT NWNLQKA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021298974.1	2e-20	agamous-like MADS-box protein AGL66 isoform X2
TrEMBL	A0A2P5YI85	8e-59	A0A2P5YI85_GOSBA; Uncharacterized protein
STRING	EOX99189	4e-16	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35619	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	2e-10	AGAMOUS-like 14