PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1263
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 273aa    MW: 31842.5 Da    PI: 8.2386
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1263genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_125.62.6e-08248267726
                  HHCHHHHHHHHHHHHHHHHH CS
       bZIP_1   7 errkqkNReAArrsRqRKka 26 
                  ++r+++NReAAr+sR+RK+ 
  Gh_A12G1263 248 QKRLAQNREAARKSRLRKED 267
                  89****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047271.1E-4666231IPR006816ELMO domain
PROSITE profilePS5133528.67381242IPR006816ELMO domain
PROSITE patternPS000360249264IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MKFTGAERRA VKSWNGHTIP LTYYHTNAMV GPKSWLGGLF NRFGNRRNEK FLGYTLTPIQ  60
EQRLHRLQER LHIPFDETRP DHQKALIKLW HIAFPNVVLT GLISEQWKDM GWQGPNPSTD  120
FRGCGFISLE NLLFFGQNFP ASFHRLLLKE EGDRATWEYP FAVAGINVSF MLIQMLDLYS  180
EKPKNLPGLN FLKLLGEDEE AFDVLYCVAF ELMDAQWLAM HASYMEFNEV LQVTRTQLQR  240
ELSLDDIQKR LAQNREAARK SRLRKEDRDS VGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6idx_A2e-1244270278521Engulfment and cell motility protein 2
6ie1_A2e-1244270278521Engulfment and cell motility protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258265RKSRLRKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438162.11e-164PREDICTED: ELMO domain-containing protein A-like isoform X1
RefseqXP_017636516.11e-164PREDICTED: ELMO domain-containing protein A-like
TrEMBLA0A0D2T6M61e-162A0A0D2T6M6_GOSRA; Uncharacterized protein
STRINGGorai.008G153300.11e-163(Gossypium raimondii)