PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1276
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 212aa    MW: 24892.5 Da    PI: 8.7596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1276genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-122574455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   +++E++RR+++++ ++ L +llP++  ++++ ls  + + +Av+YIk Lq
  Gh_A12G1276 25 ERKIIEKNRRNHMKNLYSMLNSLLPHQ--NSKEPLSLPDQVDEAVKYIKRLQ 74
                 5789**********************6..26666*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-122097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-62078No hitNo description
PROSITE profilePS5088811.7382173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-102392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-82574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-42779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEYLTHNLGG NKGMKRSRCS SAKVERKIIE KNRRNHMKNL YSMLNSLLPH QNSKEPLSLP  60
DQVDEAVKYI KRLQTKLKES RERKESLMGR TRSYKCTHSN DSTKPAEIRI NEKGSAMEVA  120
LMTGPGSQYM FYEMIRIFHE DGAHVLNANF WVVGNTIFHI VHAEIGEFGV AKIIKEKLNK  180
FVNEDRCREE ELEQELYWDY EIPPETWNFH IM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.158570.0boll| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016722681.11e-159PREDICTED: transcription factor bHLH36-like
TrEMBLA0A1U8M7951e-158A0A1U8M795_GOSHI; transcription factor bHLH36-like
TrEMBLA0A2P5VPQ31e-158A0A2P5VPQ3_GOSBA; Uncharacterized protein
STRINGGorai.008G154300.11e-154(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-38bHLH family protein