PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1283
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 351aa    MW: 38367.9 Da    PI: 7.9702
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1283genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like62.48.6e-20167214956
      G2-like   9 eLHerFveaveqLGGsekAtPktilelmkvkgLtle.hvkSHLQkYRla 56 
                  +LH+r v+aveqL G +kA+P++ilelm++++Lt++ +++SHLQkYR++
  Gh_A12G1283 167 KLHRRLVQAVEQL-GLDKAVPSRILELMGIQCLTRHnNIASHLQKYRSH 214
                  6************.********************9736*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015574.4E-18167214IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.1E-18167217IPR009057Homeodomain-like
SuperFamilySSF466891.54E-9167217IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MLAVSPLRNT TEDENKGAME NFKFNISSEE FTDFYHGNLL ESIDFEDLFV DGYVLPDLEM  60
DPEILAELPA PGGEDPEMNA SVEETGDGYN QRKEEEGKVS DPGSCSGSAL GWSRSKGEEI  120
VSKREEGRAV KTTSKDADKG RKSPAQAKNN NQGKRKEKTS RGSKDGKLHR RLVQAVEQLG  180
LDKAVPSRIL ELMGIQCLTR HNNIASHLQK YRSHRKHLLA REAATAASWT QKSQICGAAT  240
TAAGNKWNKP RNTLLSTTTA TSNKEICCST GPGHSTASWH HVQGRPRHSR PISPHPLMDF  300
HPSKESINAA IGDVLSKPWQ PLPQGLKPPA SDTVLGELQR PGLPNIPPSS A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438187.11e-154PREDICTED: transcription activator GLK1-like isoform X1
TrEMBLA0A0D2U3U21e-153A0A0D2U3U2_GOSRA; Uncharacterized protein
STRINGGorai.008G155000.11e-154(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22092773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.16e-47GBF's pro-rich region-interacting factor 1