PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1285

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 288aa MW: 32729.9 Da PI: 9.3011

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1285	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.8	3.1e-34	59	199	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tk..sgyWk 84 lp+G++F+Ptd+el+ e+L+ kv+++ ++++ i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ t+ + +W+ Gh_A12G1285 59 LPAGVKFDPTDQELL-EHLEGKVRSDArklhplIDEFIPtIEGEnGICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKvhtdTEggETRWH 154 799**********.99**9996665443332333665557******.555666688**************745553344667 PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +tgk+++v+ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l Gh_A12G1285 155 KTGKTRPVFI-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 199 ********.9*********6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-38	54	218	IPR003441	NAC domain
PROSITE profile	PS51005	34	59	218	IPR003441	NAC domain
Pfam	PF02365	6.7E-16	60	199	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MTWCNDCSDV QTIERSSPPS YHKTVIAQRH KDCLLRACPS CGHQIKYRDQ GGIHDLPGLP 60 AGVKFDPTDQ ELLEHLEGKV RSDARKLHPL IDEFIPTIEG ENGICYTHPE KLPGVSKDGL 120 VRHFFHRPSK AYTTGTRKRR KVHTDTEGGE TRWHKTGKTR PVFIGGKVKG YKKILVLYTN 180 YGKQRKPEKT NWVMHQYHLG NNEEEKDGEL VISKVFYQTQ PRQCGSIKDS LKLQSGHEAS 240 HHLKNNNNNG LVEFYNPSFI SFDQGGQSRA NPTQLLPHFA VHDGSFIP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269\|PubMed:18952777}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ914146	0.0	JQ914146.1 Gossypium hirsutum NAC domain protein 15 (NAC15) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017635339.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	1e-131	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A0B0MNG2	0.0	A0A0B0MNG2_GOSAR; NAC domain-containing 8-like protein
STRING	Gorai.008G155200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2012	28	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-134	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]