PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1446
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 749aa    MW: 81865.6 Da    PI: 5.9759
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1446genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.2e-1984139156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++++e++F+++++p+ ++r+eL + lgL+  qVk+WFqN+R+++k
  Gh_A12G1446  84 KKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELGRVLGLEPLQVKFWFQNKRTQMK 139
                  688999***********************************************999 PP
2START210.27.5e-662674871206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela +a++elv++a+ +ep+W++s     +  n++e++++f+++ +     ++ ea++++ v++m++  lve+l+d+  qW++ +     ka+tl+v+
  Gh_A12G1446 267 ELAVAAMEELVRLAQMGEPLWMTSLdgstTVFNEEEYIRTFPRGIGpkptgFKCEASKETCVLIMNHISLVEILMDVQ-QWSTVFSaivsKASTLDVL 363
                  57899********************88888889**********999********************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  s+g      galq+m+ae+q++splvp R++++vRy++ + +g+w++vdvS+d+ +++p     +R++++pSg+li++++ng+skvtw+ehv++++r 
  Gh_A12G1446 364 STGiagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKHHAEGTWAVVDVSLDNIRPNPA----MRCRRRPSGCLIQEMPNGYSKVTWIEHVEVEDRG 457
                  ***********************************************************5....********************************** PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  +h+l+++lv+sg+a+gak+w atl+rqce+
  Gh_A12G1446 458 VHNLYKQLVSSGHAFGAKRWIATLDRQCER 487
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-2166139IPR009057Homeodomain-like
SuperFamilySSF466892.21E-1872141IPR009057Homeodomain-like
PROSITE profilePS5007116.19681141IPR001356Homeobox domain
SMARTSM003896.7E-1882145IPR001356Homeobox domain
PfamPF000469.0E-1784139IPR001356Homeobox domain
CDDcd000861.55E-1784142No hitNo description
PROSITE profilePS5084844.059258490IPR002913START domain
SuperFamilySSF559614.4E-34259489No hitNo description
CDDcd088756.24E-125262486No hitNo description
SMARTSM002345.6E-58267487IPR002913START domain
PfamPF018523.4E-55268487IPR002913START domain
Gene3DG3DSA:3.30.530.205.8E-5363456IPR023393START-like domain
SuperFamilySSF559618.24E-24507741No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MPSMISGNGN IGGFGTISGL SLGQQPNNNM MEGQLHPFEM TQNTSESEIA RMRDEEFDSA  60
LKSGSENHEG VSGEDDQDPR PNKKKRYHRH TQHQIQQMEA FFKECPHPDD KQRKELGRVL  120
GLEPLQVKFW FQNKRTQMKT QHERQENSQL RAENEKLRAD NMRYREALST ASCPNCGGPT  180
TVGQMSFDEH HLRLENARLR EEIDRISAIA AKYVGKPVVS YPLLSSPMTP RPLDFGSQTG  240
SGEMYGTGEL LRSINAPAEA DKPMIIELAV AAMEELVRLA QMGEPLWMTS LDGSTTVFNE  300
EEYIRTFPRG IGPKPTGFKC EASKETCVLI MNHISLVEIL MDVQQWSTVF SAIVSKASTL  360
DVLSTGIAGN YNGALQVMTA EFQVPSPLVP TRESYYVRYC KHHAEGTWAV VDVSLDNIRP  420
NPAMRCRRRP SGCLIQEMPN GYSKVTWIEH VEVEDRGVHN LYKQLVSSGH AFGAKRWIAT  480
LDRQCERLAS LMATNIPTGD AGVITNQDGR KSMLKLAERM VISFCAGVGA STAHTWTTLS  540
GTGADDVRVM TRKSVDDPGR PPGLVLSAAT SFWLPVSPKR VFDFLRDENS RNEWDILSNG  600
GVVQEMAHIA NGRDTGNCVS LLRVNSANSS QTNMLILQES CTDPTASFVI YAPVDIVAMN  660
VVLNGGDPDY VALLPSGFAI LPDGSSGSSG SGVADAGGSS GGSLLTVAFQ ILVDSVPTAK  720
LSLGSVATVN NLIACTVERI KASLTCENA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.133580.0boll| ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO783441280.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016726344.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A1U8ML780.0A0A1U8ML78_GOSHI; homeobox-leucine zipper protein HDG2-like isoform X1
STRINGGorai.008G172800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2