PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1509

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 364aa MW: 40225.7 Da PI: 9.0182

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1509	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	106	166	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt GGa+rnvPvG+grrk k+ss Gh_A12G1509 106 PDKILPCPRCNSKETKFCYYNNYNVNQPRHFCKNCQRYWTDGGAMRNVPVGAGRRKTKSSS 166 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-29	103	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-31	108	164	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.696	110	164	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	112	148	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MSELNDSSSI KLFGKMIPLL RFNQDETLVL DSSNRYLLSS SNSLGAMNSN HGLQLQAPIE 60 DKEKNEEDDC GSRVPLSERK PSSLESSKNE EKSETNNSQE KTLKKPDKIL PCPRCNSKET 120 KFCYYNNYNV NQPRHFCKNC QRYWTDGGAM RNVPVGAGRR KTKSSSSSLH YHHVMISEAI 180 LGAQASAVNQ ASGDSCVFTF GSDSSVFSLP RLPPSTLYRP GFPASFYSSP TYRPSVVPVA 240 TLSSASINQC APNTESSSPT PTWPFLGKHS RDEKGKPSAD SNISERRASS NSKALRIDDD 300 TEETAKSSML ATLRIKTKNT NSGGIFDGFQ SKTSDDRNYR LTTFSMLRAN PAALSRSLHF 360 HENT

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MSELNDSSSI KLFGKMIPLL RFNQDETLVL DSSNRYLLSS SNSLGAMNSN HGLQLQAPIE  60
DKEKNEEDDC GSRVPLSERK PSSLESSKNE EKSETNNSQE KTLKKPDKIL PCPRCNSKET  120
KFCYYNNYNV NQPRHFCKNC QRYWTDGGAM RNVPVGAGRR KTKSSSSSLH YHHVMISEAI  180
LGAQASAVNQ ASGDSCVFTF GSDSSVFSLP RLPPSTLYRP GFPASFYSSP TYRPSVVPVA  240
TLSSASINQC APNTESSSPT PTWPFLGKHS RDEKGKPSAD SNISERRASS NSKALRIDDD  300
TEETAKSSML ATLRIKTKNT NSGGIFDGFQ SKTSDDRNYR LTTFSMLRAN PAALSRSLHF  360
HENT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016703768.1	0.0	PREDICTED: cyclic dof factor 1-like isoform X1
TrEMBL	A0A1U8KRZ0	0.0	A0A1U8KRZ0_GOSHI; cyclic dof factor 1-like isoform X1
STRING	Gorai.008G180400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18962	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	3e-56	cycling DOF factor 1