PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1529
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 390aa    MW: 44118.4 Da    PI: 9.96
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1529genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-1168124155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++++gr++A+++d  s+n  +r k  + g ++ +e Aa+a++ a+ k++g
  Gh_A12G1529  68 SRFRGVSRHRWTGRFEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAAIKYWG 124
                  789******************88887786625555.********************98 PP
2AP249.61e-15167218155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Gh_A12G1529 167 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 218
                  79****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.41E-1468134IPR016177DNA-binding domain
CDDcd000181.04E-1668134No hitNo description
PfamPF008474.6E-868124IPR001471AP2/ERF domain
PROSITE profilePS5103217.85969132IPR001471AP2/ERF domain
SMARTSM003803.3E-1769138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-1269133IPR001471AP2/ERF domain
PRINTSPR003672.8E-57081IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-17167228IPR016177DNA-binding domain
CDDcd000181.46E-22167228No hitNo description
PfamPF008472.0E-11167218IPR001471AP2/ERF domain
PROSITE profilePS5103218.703168226IPR001471AP2/ERF domain
SMARTSM003807.1E-25168232IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-18168227IPR001471AP2/ERF domain
PRINTSPR003672.8E-5208228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEIVTAKSEF SPGRTRLCTA EDNAIDTNYI KRRRRDHSNS ALGLSNQQQR HQQLQGDQPT  60
ATTVKRSSRF RGVSRHRWTG RFEAHLWDKG SWNPTQRKKG KQGAYDEEES AARAYDLAAI  120
KYWGTSTFTN FPVSDYGTEI EIMRSVTKEE YLASLRRRSS GFSRGVSRYR GVARHHHNGR  180
WEARIGRVFG NKYLYLGTYS TQEEAAHAYD IAAIEYRGIN AVTNFDLSTY IRWLKPGAND  240
ALISEQIKTA STTRLMMTSN IFPTEQTNGL TLFNSNPLTE KAIDIRKKGV VSPCPKTSPA  300
LSLLLRSSMF NKLVEQNLNA NYDQTEEKDV KEAVDKNGRG EMLCNEVDGG VLPFMCSNNR  360
GLESKESKVP LYNRTGQSMW NGALNLLTNA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193101PTQRKKGKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704615.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A1U8KQ970.0A0A1U8KQ97_GOSHI; AP2-like ethylene-responsive transcription factor At1g79700
STRINGGorai.008G182500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-72AP2 family protein