PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1550
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 379aa    MW: 41985.3 Da    PI: 6.7422
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1550genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.11.7e-32213268156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Gh_A12G1550 213 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 268
                  79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-29210271IPR009057Homeodomain-like
PROSITE profilePS5129414.185210270IPR017930Myb domain
SuperFamilySSF466892.02E-18211271IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-27213268IPR006447Myb domain, plants
PfamPF002491.5E-7215266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0055062Biological Processphosphate ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MIEMDYAQKK RRYHEYVEAL EEERRKIQVF QRELPLCLEL VTQAIEAHKK EMSGGSTTTD  60
YLQGQSDCSE QTTSDVPVLE EFIPIKRSSN CSEEDDEQES HKSKETNVPA AVDKRKSDWL  120
RSVQLWNNNQ SPDLPLNEDD DKIRSAVEVK KNGGAFQPFQ KEKTAEMSGQ SAGGKTNGSA  180
TSTCTTESGS RGGEANNANT SKTEEKEGQA SRKQRRCWSP ELHRRFLHAL QQLGGSHVAT  240
PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPTVHNNA NPQAPQFVVV GGIWVPPPDY  300
STMTTTTTST KTATMTPTSG IYTPVAAPLP ALPQPSGTMA QRPQQSDSEE RGSHSEGRVQ  360
SNSPSISSST HTTTDSPAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-12213266154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-12213266154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-12213266154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-12213266154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.5010.0boll| ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738633770.0
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269|PubMed:27016098}.
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00218DAPTransfer from AT1G68670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269|PubMed:27016098}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5264432e-63HQ526443.1 Gossypium herbaceum clone NBRI_D2_1421 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639278.10.0PREDICTED: myb family transcription factor EFM
SwissprotQ8VZS31e-106HHO2_ARATH; Transcription factor HHO2
SwissprotQ9FPE81e-106HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A0D2T8310.0A0A0D2T831_GOSRA; Uncharacterized protein
STRINGGorai.008G185500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34912863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-107G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]
  2. Sun X, et al.
    The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides.
    J. Exp. Bot., 2018. 69(7): p. 1749-1764
    [PMID:29385617]