PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1614

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 508aa MW: 55389 Da PI: 5.2884

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1614	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.5e-39	153	213	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s Gh_A12G1614 153 PDQILPCPRCNSMDTKFCYYNNYNIKQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 213 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-30	146	210	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-32	154	211	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.602	157	211	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	159	195	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MQESKDPGIK LFGKKIHLPA DGEISTLSVD EFDKAQCGNR VVDDEDYEEF DDDDDYDGVG 60 GDGDGDGGEE EDEQKDKTEQ DSLAERIADT GQEDDNIQPS NREESTNPET SPEPNVNPKT 120 PSIDEETGKS KTGKTDKEQS DGSKSQEKTL KKPDQILPCP RCNSMDTKFC YYNNYNIKQP 180 RHFCKACQRY WTAGGTMRNV PVGAGRRKNK NSASHYRHIS ISEALQAARI DAPNAAHHPA 240 LKSNGRVLSF GLDAPICDSM ASVLNLGEKK VLNGARNGFH GLEEQRVSVP NRRENGDDCS 300 SGSSITVSNS MEEGGRSCIQ ENRMGNINGF PSPIPCLPGV PWPYPWNSTV PPPAFCPSGF 360 PMSFYPAAAY WNCGIPGTWN VPWLSPQSSS TSSNHKAPTS GPNWPTLGKH SREGDMAKLD 420 DSEKQKATKQ KNGCVLVPKT LRIDDPSEAA KSSIWATLGI KNESLSGGGL FKAFHPKSDE 480 KNHVAESSPV LRANPAALSR SLNFHESS

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MQESKDPGIK LFGKKIHLPA DGEISTLSVD EFDKAQCGNR VVDDEDYEEF DDDDDYDGVG  60
GDGDGDGGEE EDEQKDKTEQ DSLAERIADT GQEDDNIQPS NREESTNPET SPEPNVNPKT  120
PSIDEETGKS KTGKTDKEQS DGSKSQEKTL KKPDQILPCP RCNSMDTKFC YYNNYNIKQP  180
RHFCKACQRY WTAGGTMRNV PVGAGRRKNK NSASHYRHIS ISEALQAARI DAPNAAHHPA  240
LKSNGRVLSF GLDAPICDSM ASVLNLGEKK VLNGARNGFH GLEEQRVSVP NRRENGDDCS  300
SGSSITVSNS MEEGGRSCIQ ENRMGNINGF PSPIPCLPGV PWPYPWNSTV PPPAFCPSGF  360
PMSFYPAAAY WNCGIPGTWN VPWLSPQSSS TSSNHKAPTS GPNWPTLGKH SREGDMAKLD  420
DSEKQKATKQ KNGCVLVPKT LRIDDPSEAA KSSIWATLGI KNESLSGGGL FKAFHPKSDE  480
KNHVAESSPV LRANPAALSR SLNFHESS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.16004	0.0	boll\| ovule\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269\|PubMed:19619493}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393639	1e-89	GQ393639.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0604 SSR marker CGR5655 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016722130.1	0.0	PREDICTED: cyclic dof factor 3-like
Swissprot	Q8LFV3	1e-127	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A1U8M5T9	0.0	A0A1U8M5T9_GOSHI; cyclic dof factor 3-like
STRING	Gorai.008G193700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-124	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]