PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1649
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 148aa    MW: 17478.9 Da    PI: 8.4763
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1649genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.96.3e-133813738128
          NAM  38 diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknra...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                  ++++++P +  +      ++ ++e+ew+fF+  d +  + ++k       + g+W++ g  k v++++g+   +k t+++++g+ ++ +kt+W ++e+
  Gh_A12G1649  38 QMMRSKPGRVVAgqciivQFCNGEREWFFFIYMDMNIDNMHNKAIEkggDELGFWQSIGDRKCVKDTNGNILATKITFIYFSGSPSHRKKTHWRIDEF 135
                  5666666666433455555556899********99988755444432224589********************************************* PP

          NAM 127 rl 128
                  rl
  Gh_A12G1649 136 RL 137
                  98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.1251148IPR003441NAC domain
PfamPF023651.0E-544137IPR003441NAC domain
SuperFamilySSF1019415.36E-1458140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEDQVDGNED YGDKLPVGFR NQRHRALYQI SQEFQMNQMM RSKPGRVVAG QCIIVQFCNG  60
EREWFFFIYM DMNIDNMHNK AIEKGGDELG FWQSIGDRKC VKDTNGNILA TKITFIYFSG  120
SPSHRKKTHW RIDEFRLPIQ FYTLHNSK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022715890.16e-33protein CUP-SHAPED COTYLEDON 2-like
TrEMBLA0A0D2U6991e-73A0A0D2U699_GOSRA; Uncharacterized protein
STRINGGorai.008G197500.12e-74(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2188055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.24e-08NAC domain containing protein 35