PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1858

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 236aa MW: 26758 Da PI: 8.4281

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1858	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.2	3.6e-33	29	83	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Gh_A12G1858 29 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 83 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-32	26	84	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.354	26	86	IPR017930	Myb domain
SuperFamily	SSF46689	1.04E-16	28	86	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.5E-25	29	84	IPR006447	Myb domain, plants
Pfam	PF00249	6.3E-9	31	82	IPR001005	SANT/Myb domain
Pfam	PF14379	4.3E-20	130	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MERLSYGGGG GGEGNYWYEN EVVMSRDQKP RLRWTADLHD RFVDAVTKLG GPDKATPKSV 60 LRLMGMKGLT LYHLKSHLQK YRLGQQTRKQ NAVDLNKVNG GNSYVQCSNH FSGTIITNSP 120 RADSEQRQIP VAEALKNQVE VQQTLQEQLE VEKKLQMRID AQGKYLQAIL EKAQKRVSID 180 INYCEGNGEE ETNFNVLNKV NCSAFQNYGG RWRENSKDVK LEVEGDSIAF DLKDQT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-19	29	82	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	29	82	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	29	82	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	29	82	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016736747.1	1e-176	PREDICTED: myb family transcription factor APL-like isoform X1
Swissprot	C0SVS4	2e-69	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A1U8NCJ3	1e-175	A0A1U8NCJ3_GOSHI; myb family transcription factor APL-like isoform X1
STRING	Gorai.008G221900.1	1e-162	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24436	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	6e-57	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]