PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1904
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LSD
Protein Properties Length: 175aa    MW: 18807.1 Da    PI: 8.4851
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1904genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.91.7e-134064125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL YP GA+sV+Ca+C++V
  Gh_A12G1904 40 CSGCRNLLLYPVGATSVCCAVCNAV 64
                 ************************9 PP
2zf-LSD146.46.4e-1579103125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  CggC+tlL+Y rGA+sV+C++C+tV
  Gh_A12G1904  79 CGGCHTLLMYIRGATSVQCSCCHTV 103
                  ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.3E-123767IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-104064IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.2E-1476105IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-1279103IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEIQINILWG SQTVPLAPYP TPPAPYTPPA ANGAQSQLVC SGCRNLLLYP VGATSVCCAV  60
CNAVTAVPPP GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEVC NFVTSVGVSS  120
QAQLVLLNRS STAETILDPK SDIRSNKFAF VHYKYLPPRL RPIGKWRKLL LLALY
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027345016.11e-60protein LOL1-like isoform X2
SwissprotQ93ZB12e-49LOL1_ARATH; Protein LOL1
TrEMBLA0A2P5C7N23e-58A0A2P5C7N2_PARAD; Zinc finger, LSD1-type
STRINGcassava4.1_018557m9e-58(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.35e-36lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]