PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1918
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 564aa    MW: 62317.2 Da    PI: 6.5082
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1918genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.52.7e-27317371156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k +++Wtp LH++Fv+av+qL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Gh_A12G1918 317 KSKVDWTPALHKKFVQAVDQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 371
                  6799*****************.********************************96 PP
2Response_reg26.82.5e-10201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d++ + +  l++ le  +y +v ++ +  eal  +  +   +++ ++ i+  + +G+  +k +++++ +lp i+ +     +++ +++ +Ga 
   Gh_A12G1918  20 VLLLDEDSNSAAELKSKLEAMDY-IVYTFCNENEALSAVSSRPesFHVAIVEINTNKKNGS--FKFLETAK-NLPTIMTSNIHCISTMMKCIALGAV 112
                   789999999999***********.***************666666*************996..66676666.899999998888************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp ++e+l++
   Gh_A12G1918 113 EFLKKPLSEEKLRN 126
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.13E-1516134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.1E-1616155No hitNo description
PROSITE profilePS5011020.4819132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.48E-821131No hitNo description
PROSITE profilePS5129415.046314373IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-27315374IPR009057Homeodomain-like
SuperFamilySSF466891.02E-17315374IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-25317371IPR006447Myb domain, plants
PfamPF002492.2E-6320369IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MICTTNDLSE WKDFPKGLKV LLLDEDSNSA AELKSKLEAM DYIVYTFCNE NEALSAVSSR  60
PESFHVAIVE INTNKKNGSF KFLETAKNLP TIMTSNIHCI STMMKCIALG AVEFLKKPLS  120
EEKLRNIWQH VVRKAFNSVG TDLSESVKPV KESLVSMLYL QLENGEPKNK DLDKTQDASV  180
IHENDPEPST GSDKYPAPST PQLEQGGRLS ADGDCQDQAN CSIEKESSEQ DGESKSVETT  240
SDNTIAEVTI PVGQPLGPRD TMVTEEADLV DGTKGESTTY SQTENGVNSK NSQAVAVKPG  300
TVSGIHSSCL NKANRKKSKV DWTPALHKKF VQAVDQLGID QAIPSRILEL MKVEGLTRHN  360
VASHLQKYRM HRKHILPKED NRRWPQRDQT QRSCYPHKPI IAFPPHYSNH DVPVGPLYPM  420
WGAPSSIQMW GSQGYPLWQP TESWHWKPYP GAHADAWGCP VMPPPHGYSS AFTQVSSYQN  480
ASVFHCSGTM DNRSGMPQNS VEHQPAEEVI DKVVKEAISK PWLPLPLGLK PPSTDTVLAD  540
LSKQGISTFP PHINGPNSSC HGTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-17317373157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636369.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-143APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A0B0P6C00.0A0A0B0P6C0_GOSAR; Two-component response regulator-like APRR2
STRINGGorai.008G228800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-146ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]