PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1945
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 530aa    MW: 58843.1 Da    PI: 7.1709
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1945genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.2e-16741135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Gh_A12G1945  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                 ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-11545No hitNo description
CDDcd002021.33E-16654No hitNo description
PfamPF003206.9E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139198.1E-12271357IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RVEPADYEDR  60
RTSRMKNISI KKNKEIKLLK SKANHGTAVV APDCNLGFRK FVDEDSSNRS SSGSAISNSE  120
SCAQFGSADA SDLTGPAQSN VWESMVPSKK RTFVNRPKQS PLEKLTKDLY TILHEQQSSY  180
FSGSSEEDLL LESETPMVSV EIGHGSVLIR HPSSIARDEE SEASSLSVEN KQYSTNEAYS  240
HSSTFPVYSD SIKKAKNPAE QGMQHEQLKR DKAQIEKSLM LESQKSPLCN TDLNDILNFE  300
EFVKHLTNEE QQQLLQYLPP VDIAKLPDSL QSMFESSQFK ENLCYFQQLL AEGVFNISVP  360
GVKAEDCRTL KRLALFNLTK SQWVERRHVL KRCQDSIGAP VVARGPTATT SNNLVIMKRS  420
CDSQSQNFPE ARTIKCPKRV VMKATCENKE VIDNDGSCFS PRSLFALPPD GSSLLLDSLH  480
FVNESSDQDL LLDVPPNGSF PQAELLHPTL SFGQQASTSS SSARSHHVHP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016728778.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-151GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2P5Y2L80.0A0A2P5Y2L8_GOSBA; Uncharacterized protein
STRINGGorai.008G231500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-129GATA transcription factor 26