PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1951
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 294aa    MW: 33904.6 Da    PI: 9.0276
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1951genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.51.9e-093581355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 +kGV   + +++W A+I        + + ++lg++ t+eeAa a+++a++kl +
  Gh_A12G1951 35 FKGVLPLE-SHKWGARISF------NyRAYWLGTYYTEEEAAIAYDRAALKLLK 81
                 66664333.699****999......34************************975 PP
2B355.31.2e-17152250184
                  EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk. 83 
                  f k+lt+ dv+  +++ +pk++a ++              +g  + s+++t++d+  r W+++++y+++ + ++++kGW++Fv  n L+ gD+v+F+ 
  Gh_A12G1951 152 FHKELTQIDVSDADLFQIPKEYALQFlppvgnnssgngvqMG--RDSIDITFYDKYYRPWTFRYSYWGRIKVFLFAKGWRDFVIMNSLNPGDTVIFYg 247
                  89*********************999***9888877665322..2899************************************************96 PP

                  ..E CS
           B3  84 ..l 84 
                    +
  Gh_A12G1951 248 cyH 250
                  532 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.88E-163391No hitNo description
SMARTSM003806.7E-123495IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-143491IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-123489IPR001471AP2/ERF domain
PROSITE profilePS5103214.463489IPR001471AP2/ERF domain
PfamPF008472.0E-43780IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.7E-19147252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-19150246IPR015300DNA-binding pseudobarrel domain
CDDcd100171.99E-17151246No hitNo description
PfamPF023622.3E-14152255IPR003340B3 DNA binding domain
PROSITE profilePS5086310.673152266IPR003340B3 DNA binding domain
SMARTSM010193.4E-9152269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEGSPNSNNK TTPYQKISGR CSGIDTGSRR LSTRFKGVLP LESHKWGARI SFNYRAYWLG  60
TYYTEEEAAI AYDRAALKLL KTDASLNLPY NIYTPQEKSF QSWYSDDEIL NMIKDKTYSS  120
HFTAFLVHQS LAKKTLPGSL INAKGLSCEM LFHKELTQID VSDADLFQIP KEYALQFLPP  180
VGNNSSGNGV QMGRDSIDIT FYDKYYRPWT FRYSYWGRIK VFLFAKGWRD FVIMNSLNPG  240
DTVIFYGCYH VDEEGQKRMF YMIDIHRNVP EKYIVGERYV DGINGVKLFG VRIG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635830.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A1U8MTA40.0A0A1U8MTA4_GOSHI; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
STRINGGorai.008G232300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2074046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.15e-54RAV family protein