PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2042
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 242aa    MW: 26373.7 Da    PI: 9.1672
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2042genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.24e-25129173145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rs k +e+
  Gh_A12G2042 129 DPEPGRCRRTDGKKWRCSKEAVPDHKYCERHMHRGRQRSGKLVEA 173
                  79***************************************9987 PP
2QLQ43.21.2e-156094337
          QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                 FT  Qlq+L  Q l+yKy+ a++PvP +Ll++++k
  Gh_A12G2042 60 FTVFQLQELQLQSLIYKYMEAGLPVPNHLLLPLWK 94
                 8888*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-55894IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.4815994IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.5E-106093IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.517129173IPR014977WRC domain
PfamPF088793.7E-21130171IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEPQYTPLKI ARFADFGIGL TNMESNMLSG GEGSPPIGLG LELGRGSDHR PTGFTKSCGF  60
TVFQLQELQL QSLIYKYMEA GLPVPNHLLL PLWKSVAGSL GGLHANPYQL YSSYLGCGPL  120
HLEYKNGVDP EPGRCRRTDG KKWRCSKEAV PDHKYCERHM HRGRQRSGKL VEASQATSSG  180
SRIIRHGNAD TNLSISLQLD NSNTSSSGSS SNLSSGFIGF SPKSVLRGSN PKSESSIQFQ  240
EI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.215390.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5864653e-92JX586465.1 Gossypium hirsutum clone NBRI_GE20297 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016724585.11e-179PREDICTED: growth-regulating factor 10-like
TrEMBLA0A1U8MCS71e-178A0A1U8MCS7_GOSHI; growth-regulating factor 10-like
STRINGGorai.008G241800.11e-148(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16724712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-34growth-regulating factor 2