PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2051
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 384aa    MW: 41130.3 Da    PI: 9.0042
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2051genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.84.7e-3586187298
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnsssgka 90 
                  ++k++ ++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++         ++++ + s++ns+++  
  Gh_A12G2051  86 TAKRSYNKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEHAIIEATGTGTVPAIAVsvggtlkipTTSATNTSNNNSQID-- 181
                  678999**********************************************************77777333333332211111111111111111.. PP

          TCP  91 aksaaksk 98 
                    + +k++
  Gh_A12G2051 182 --DRTKKR 187
                  ..111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.43692146IPR017887Transcription factor TCP subgroup
PfamPF036349.6E-2992183IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDPSEDAGTS DLSTSTGGPN NATPTAANSV KNDENCENSA LMVMPLKEEP IEPDPDRKTH  60
PPRPIRVVPV SRQMSMQIPI PTPVTTAKRS YNKDRHTKVE GRGRRIRIPA TCAARIFQLT  120
RELGHKSDGE TVRWLLEHAE HAIIEATGTG TVPAIAVSVG GTLKIPTTSA TNTSNNNSQI  180
DDRTKKRKRP ASSEFCDVND GIPIAVAQQQ QQQRLVTQYS GLAPVAQQAL VPVWAVGNTG  240
MMVPANAFWM IPQSTPTASG DWLTNQRPPP QLWAFSPALT SVCNIAARPT FSFVATTTET  300
QAVVCDGVST LAVSTSSTPV GATEAKKSTM APSVSSGGNG GGGTGGKAQM LRDFSLEIYD  360
KQELQLMGRS WNHHQQQIKA ASKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.97040.0boll| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272251e-168HQ527225.1 Gossypium herbaceum clone NBRI_B_2245 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016724650.10.0PREDICTED: transcription factor TCP19-like
TrEMBLA0A1U8MCZ20.0A0A1U8MCZ2_GOSHI; transcription factor TCP19-like
STRINGGorai.008G243000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17337611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.17e-59TCP family protein