PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G2060

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 670aa MW: 74782.3 Da PI: 6.3362

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2060	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	425.3	4.9e-130	288	655	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++c+ea+ s++ +++++++a+l +lasp+g+++ Rl+ay+teAL r++r +++++++ +p+e + + +++ +al+l+++vsPi+kf h+t Gh_A12G2060 288 LIHLLTACVEAIGSKNIAAINHYIAKLGDLASPRGSAISRLTAYYTEALTLRVTRLWPHIFHITTPRELD-RVDDDNGTALRLLNQVSPIPKFFHFTS 384 689**************************************************************998.5678888999************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++R+Tg+g+ sk+el+etg+rL+ fAe+l++pfef++ v++rled++l++L+v Gh_A12G2060 385 NEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRANPPSHVRVTGIGE----SKQELNETGDRLSGFAEALNLPFEFHP-VVDRLEDVRLWMLHV 477 ***********************************************....***********************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 k++E++aVn+v+qlh++l + + +++L l++s++P vvv++eqea+hn s+ +r++++l+yysa+fds++++lp es r+kvE++ ++rei Gh_A12G2060 478 KEKETVAVNCVFQLHKTLYDGNGGA--LRDLLGLIRSTNPAVVVMAEQEAEHNVLSLEARVTNSLRYYSAIFDSIDSSLPMESPVRMKVEEM-FAREI 572 **************6554444..588**********************************************************.* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374 +n++aceg++r+erhe++ekWr+ +e+ F+ + +se++ q ++ll+++ + y+v+ e+ g+l+l W d+pL+svSaW+ Gh_A12G2060 573 RNIIACEGSDRFERHESFEKWRKLMEQGRFRCIGISERELLQSQMLLKMYTCENYSVKkqgEDCGALTLSWLDQPLYSVSAWT 655 ***********************************************9996666799999************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.949	262	632	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-127	288	655	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MLAGCSSSTL VSPRHRLRSE ASAQFQACHF PTSMSTQRLD LPCSFSRKDT SRSQPIRPVG 60 LSVEKPTESK TSGCSLKQNI RLPPLTTTAH EGRREIKDEF WEKGKCLKRF AAEGFIDESV 120 IDRRAKRKKG SCHNEISGDV HEGGGDNLSL GQLGAGEFWF QPSFAGHNAP QLPFSLTASG 180 DEERVCFVPG EVISPPLPLS NNPWTESVIT EITDVGEKDV ETIHRPGKEA SGSSTSSESH 240 SLGLRLNEQA TEHEVGNGSG NPYPHEGNGV GVYREEEINH REQQGFELIH LLTACVEAIG 300 SKNIAAINHY IAKLGDLASP RGSAISRLTA YYTEALTLRV TRLWPHIFHI TTPRELDRVD 360 DDNGTALRLL NQVSPIPKFF HFTSNEILLR AFEGKDRVHI IDFDIKQGLQ WPSLFQSLAS 420 RANPPSHVRV TGIGESKQEL NETGDRLSGF AEALNLPFEF HPVVDRLEDV RLWMLHVKEK 480 ETVAVNCVFQ LHKTLYDGNG GALRDLLGLI RSTNPAVVVM AEQEAEHNVL SLEARVTNSL 540 RYYSAIFDSI DSSLPMESPV RMKVEEMFAR EIRNIIACEG SDRFERHESF EKWRKLMEQG 600 RFRCIGISER ELLQSQMLLK MYTCENYSVK KQGEDCGALT LSWLDQPLYS VSAWTPIDVA 660 GSSSSFPQPK

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MLAGCSSSTL VSPRHRLRSE ASAQFQACHF PTSMSTQRLD LPCSFSRKDT SRSQPIRPVG  60
LSVEKPTESK TSGCSLKQNI RLPPLTTTAH EGRREIKDEF WEKGKCLKRF AAEGFIDESV  120
IDRRAKRKKG SCHNEISGDV HEGGGDNLSL GQLGAGEFWF QPSFAGHNAP QLPFSLTASG  180
DEERVCFVPG EVISPPLPLS NNPWTESVIT EITDVGEKDV ETIHRPGKEA SGSSTSSESH  240
SLGLRLNEQA TEHEVGNGSG NPYPHEGNGV GVYREEEINH REQQGFELIH LLTACVEAIG  300
SKNIAAINHY IAKLGDLASP RGSAISRLTA YYTEALTLRV TRLWPHIFHI TTPRELDRVD  360
DDNGTALRLL NQVSPIPKFF HFTSNEILLR AFEGKDRVHI IDFDIKQGLQ WPSLFQSLAS  420
RANPPSHVRV TGIGESKQEL NETGDRLSGF AEALNLPFEF HPVVDRLEDV RLWMLHVKEK  480
ETVAVNCVFQ LHKTLYDGNG GALRDLLGLI RSTNPAVVVM AEQEAEHNVL SLEARVTNSL  540
RYYSAIFDSI DSSLPMESPV RMKVEEMFAR EIRNIIACEG SDRFERHESF EKWRKLMEQG  600
RFRCIGISER ELLQSQMLLK MYTCENYSVK KQGEDCGALT LSWLDQPLYS VSAWTPIDVA  660
GSSSSFPQPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-75	274	656	3	380	Protein SCARECROW
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016724649.1	0.0	PREDICTED: scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A1U8MGF8	0.0	A0A1U8MGF8_GOSHI; scarecrow-like protein 28
STRING	Gorai.008G243900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7296	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein