PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2065
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 311aa    MW: 34725.1 Da    PI: 6.6277
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2065genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35211122102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d+++++lisw+e+g++f+v+++ efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++  F++g+k+ll++i+
   Gh_A12G2065  21 FLAKTYHLVDDPAVDDLISWNEDGSAFIVWHPAEFARDLLPRYFKHNNFSSFVRQLNTYGFRKMVPDR---------WEFANACFRRGEKKLLRDIH 108
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Gh_A12G2065 109 RRKI 112
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3711104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-5617110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.62E-3518110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.3E-202144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-205971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MACGSTASAT ADSQRPLPTP FLAKTYHLVD DPAVDDLISW NEDGSAFIVW HPAEFARDLL  60
PRYFKHNNFS SFVRQLNTYG FRKMVPDRWE FANACFRRGE KKLLRDIHRR KISPPAATPA  120
TVTVAVVPCE VSPSNSGDEQ VISSHSPPVA TILNGMTSCT TTSELLEENE RLRKENMQLR  180
QELTQLKGLC NNILTLMTNH ASGQLESHSI LAEGKALDLL SARDSARSTE DSGSKEVAEE  240
EDVTPKLFGV SIGVKRVRRE GEDKMRNSCQ VRQQDTEPAS KMKEEPWMGN VMIKNRGSWS  300
LGNDQTIYNA I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-252111320123Heat shock factor protein 1
5d5u_B2e-252111029129Heat shock factor protein 1
5d5v_B2e-252111029129Heat shock factor protein 1
5d5v_D2e-252111029129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674070.0KR067407.1 Gossypium hirsutum HSF26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737011.10.0PREDICTED: heat stress transcription factor B-2b-like isoform X1
SwissprotQ9T0D31e-97HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A0D2TC180.0A0A0D2TC18_GOSRA; Uncharacterized protein
STRINGGorai.008G244400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-88HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]