PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2195
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 860aa    MW: 94323.9 Da    PI: 4.6261
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2195genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.85.2e-5491351127
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+d++k+ePwdLp  + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s k
  Gh_A12G2195   9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-EVIPEIDVCKWEPWDLPglSVIKSDDPEWFFFCPRDRKYPNGHRSNRATDKGYWKATGKDRTIKS-K 104
                  699************************999.99***************6447888888**************************************.8 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyr 127
                  ++l+g+kktLvfykgrapkge+t+W+mheyr
  Gh_A12G2195 105 KSLIGMKKTLVFYKGRAPKGERTNWIMHEYR 135
                  99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-624159IPR003441NAC domain
PROSITE profilePS5100557.8569159IPR003441NAC domain
PfamPF023658.6E-2810135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 860 aa     Download sequence    Send to blast
MEVLTMETLP LGFRFRPTDE ELINHYLRLK INGRHSEVEV IPEIDVCKWE PWDLPGLSVI  60
KSDDPEWFFF CPRDRKYPNG HRSNRATDKG YWKATGKDRT IKSKKSLIGM KKTLVFYKGR  120
APKGERTNWI MHEYRPTTRE LDGTAPGQSA FVLCRLFHKV EGRNDIVKYD EVEQTGYSPA  180
MIKSSPDDTS SDLLQDTVSS DTQAQKPDNL MQNDQITGDT SSCNSHMTSN ADYHATEETM  240
VEKYPLLGSN SNLYEPNYGE IDSKVFSPLM NSQLFEDLSF FVDSPYANDF GHDQNGFHFQ  300
DGTSEQDVSF PFLDDILSNH YDSCEESNTQ KNLVDGTEMP LFGDSFISKP PPPEISYLKE  360
NGRPADTDTE MPKLQFGTEV GARRWLGGPI DNNQSLQMQT SFEPTHTQPA FYNQEYRTRN  420
ISGLGNYSVG QGTFTDSAMG NINNLQQLTS LKIHVNSGGD LGGDIGMKTG TCQPLKQLNS  480
ENFGTRGAGI KIRTRGSQQQ PNSDIVNQGT APRRICLMKL SSGPMKGSVG CVDDGKMMST  540
GLVEEEEVQS ALTEVTEAEA AEQTSSSDES EKNIVNQVTA PRRIHLQTKL STGAMKGFTG  600
CVNGGNMTSP GLVEEEVQSA LTEVTEAEAA GLTSSSDELE KNIVNQGTAP RRISLQINLS  660
TGPMKGSAGC VDGGSMTSPG LVEEEVQSAL TEVTEAEAVG QTSSSDESEM NIVNQAIAPR  720
RIRLQLSTGP MNGSAGCIDG GNMTSPGLGK EEVQSALTEA TEDEATGQIS SSCKTSSSDE  780
SEVENRFLKF EGSRDIADES YSKPRLRVKQ VDEKHSCSEK GPSLHLKPAP ALHRPNSLLV  840
PGIAIFTITL LFALFMGIWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-46915915168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.109170.0boll| ovule| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716497.10.0PREDICTED: NAC domain-containing protein 14-like isoform X2
TrEMBLA0A1U8LPK50.0A0A1U8LPK5_GOSHI; NAC domain-containing protein 14-like isoform X2
STRINGGorai.008G261400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-134NAC transcription factor-like 9