PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2356
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 827aa    MW: 88427.1 Da    PI: 5.7787
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2356genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.82.8e-24208261155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kp+++Wt++LH++F+ea++q+ G e+A+Pk+ile m+  gLt+e+v+SHLQkYR+
  Gh_A12G2356 208 KPKIVWTNTLHNQFLEALRQI-GLERAVPKKILERMNSTGLTRENVASHLQKYRI 261
                  799******************.********************************6 PP
2Response_reg80.45.9e-27161211107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakd 96 
                   +l+vdD+ + + ++  +l++ +y ev++++++ +al  l+ +  +Dl+++D+ mpgm+G+el k+i++e  klp+i++++ ++e+ +le l  Ga  
   Gh_A12G2356  16 ILVVDDDSTSLAIVSAMLREFRY-EVTSVKTPAAALSVLRSNPsIDLVVTDLHMPGMNGIELQKRINKEF-KLPVIIMSSDDDENVMLESLAGGAVF 110
                   89*********************.***************99999**********************9999.9************************* PP

                   EEESS--HHHH CS
  Response_reg  97 flsKpfdpeel 107
                   f++Kp+dp  l
   Gh_A12G2356 111 FIVKPVDPIGL 121
                   ******99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-3312157No hitNo description
SuperFamilySSF521721.57E-3113130IPR011006CheY-like superfamily
SMARTSM004489.4E-2814125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.9615129IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2216122IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.78E-2717118No hitNo description
PROSITE profilePS5129410.793205264IPR017930Myb domain
SuperFamilySSF466891.79E-17206265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-24206265IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-23208261IPR006447Myb domain, plants
PfamPF002496.2E-6213260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MVSTRSVNSP AMKITILVVD DDSTSLAIVS AMLREFRYEV TSVKTPAAAL SVLRSNPSID  60
LVVTDLHMPG MNGIELQKRI NKEFKLPVII MSSDDDENVM LESLAGGAVF FIVKPVDPIG  120
LKNVWQYAVA AKKGKSLLIE DMDRESSSSS PADGKLSLGG NTKSVSSVNN EKNDPKNGSK  180
RKGASGKGRD KDDNDDESKS PPPKKPKKPK IVWTNTLHNQ FLEALRQIGL ERAVPKKILE  240
RMNSTGLTRE NVASHLQKYR IFLKRIAERG CFASKAVIDR FLKSNFAAGH PLLLKTAQEY  300
SRLEHMERLR VLASYPGLHE SLMGHSSTRN VPLFYGHPGA SSSNAAQQPL GYGQSRLLSN  360
QTNQPLFPGS GNMLNNPNLN NHLGYGNGNG IGIGSSSSVN GGGGFSSGLL NGGNSSLTYP  420
NQVQARPDFY NAGQSSSSPF RFGSAGFHSS GSTLGNGLFG SSSSSYPSLN SSSSGSIVVN  480
GLFGSSSRSH PSLNSSSSGA TLGNGLFGSS SSSYPSLNNS SYPTLNPGYT NNAANSNRGM  540
RFYEHLLNGS APPLTVDYGS MNQTRPTGDY GSMNRTHNEN INVPTMRTTP LDSLDFMREF  600
PIPPVDNSTL IQGLGTGNTR LTEINSDQLL NNVPNLDSEP RGGDGLLQDL VLESKKLANE  660
EKAGEQSVEN SDYCLPSLFP EIYPTLDELL NCDFPDPLSD EDNHPWSEEA IGQVQSELEE  720
LINNPNPAAG DGRSNKSNPI TNKQQTGGEQ VTVTHPLSNV LQVMTAPAPA PAPAPAPAPA  780
PAPAPALAVY NSANNANNGA PVGANSSSYE DDEDFLDSLL NFNDEFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-21207267464ARR10-B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5836312e-64JX583631.1 Gossypium hirsutum clone NBRI_GE16723 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636609.10.0PREDICTED: two-component response regulator ORR24
TrEMBLA0A0D2T8D10.0A0A0D2T8D1_GOSRA; Uncharacterized protein
STRINGGorai.008G280500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162131014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.13e-49response regulator 21