PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G2405

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 367aa MW: 41552.3 Da PI: 9.1196

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2405	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121	1.4e-37	120	265	3	135
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg....... 88 k+drhski T+ g+RdRR+Rls+++a++fF Lqd+LG+dk+s t+eWLl qa ++i +l++t s++++ + +++s ss + Gh_A12G2405 120 SKRDRHSKINTANGPRDRRMRLSLDVAREFFGLQDMLGYDKASRTVEWLLIQARHEIMKLARTRVSHNNNNsvaaaA--AAAVAKSPSS-Tsegevvs 214 69***********************************************************55555332234321..2222222122.13457788 PP TCP 89 ....kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 +k ++++k+ +k + +++ la++ r+karara+ rt+ k++ ++k Gh_A12G2405 215 alegTISKGKPTEKRVKKTTFQFHPLARDLREKARARAKARTKAKNMWNQK 265 88865555555888888889999******************99988866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.0E-36	120	261	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.277	121	179	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.168	242	259	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MYPSNSNGSS EEPINDHSFF HFVTDSKQED PSFGFFNFPS PYYSQCELEQ VFQDQDHDAF 60 LHQHHDLLFH HEQYQQPLMA DSVSGTIVNV PATSAVDCTK KKSNNHNTDA EVKQQKRSSS 120 KRDRHSKINT ANGPRDRRMR LSLDVAREFF GLQDMLGYDK ASRTVEWLLI QARHEIMKLA 180 RTRVSHNNNN SVAAAAAAAV AKSPSSTSEG EVVSALEGTI SKGKPTEKRV KKTTFQFHPL 240 ARDLREKARA RAKARTKAKN MWNQKLCGST DENKLSSWCS FQTGEESSIQ HHHHNKKINP 300 SLQQVAGGDM IDESLAIINK WNPNSMFNCL QNSGINQEAS TKFLYNIHQI TGFLPFGKPW 360 EGYNNKI

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MYPSNSNGSS EEPINDHSFF HFVTDSKQED PSFGFFNFPS PYYSQCELEQ VFQDQDHDAF  60
LHQHHDLLFH HEQYQQPLMA DSVSGTIVNV PATSAVDCTK KKSNNHNTDA EVKQQKRSSS  120
KRDRHSKINT ANGPRDRRMR LSLDVAREFF GLQDMLGYDK ASRTVEWLLI QARHEIMKLA  180
RTRVSHNNNN SVAAAAAAAV AKSPSSTSEG EVVSALEGTI SKGKPTEKRV KKTTFQFHPL  240
ARDLREKARA RAKARTKAKN MWNQKLCGST DENKLSSWCS FQTGEESSIQ HHHHNKKINP  300
SLQQVAGGDM IDESLAIINK WNPNSMFNCL QNSGINQEAS TKFLYNIHQI TGFLPFGKPW  360
EGYNNKI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016718254.1	0.0	PREDICTED: transcription factor TCP18
TrEMBL	A0A1U8LYB9	0.0	A0A1U8LYB9_GOSHI; transcription factor TCP18
STRING	Gorai.008G285300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24297	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.2	2e-22	TCP family protein