PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2416
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 181aa    MW: 20956 Da    PI: 4.4226
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2416genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.3e-13447451
          AP2  4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaark 51
                 kGVr ++ +g+++AeIrd +     + kr +lg+f+t++eAa  + + ++
  Gh_A12G2416  4 KGVRKRP-WGKFAAEIRDpF-----TkKRLWLGTFDTEKEAAVVYNKKKR 47
                 8******.**********66.....34**********9999988877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.977259IPR001471AP2/ERF domain
PRINTSPR003672.2E-7314IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-19450IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-14449IPR016177DNA-binding domain
CDDcd000185.40E-20443No hitNo description
PfamPF008473.2E-7439IPR001471AP2/ERF domain
SMARTSM003801.7E-12459IPR001471AP2/ERF domain
PRINTSPR003672.2E-72541IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAAKGVRKRP WGKFAAEIRD PFTKKRLWLG TFDTEKEAAV VYNKKKREFQ IMAAVAEDEL  60
YCRRSPSSVL DVCVGKVEDE TDMKRHVVKK VVKESKIIEP CKRTIEEDEV YVNAVWDDVG  120
SVMELSWEPP PPLWDEELLG PCCLQDTVDY ELTLPENLPE IEIDFVQDMA WVDELFNVES  180
K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016718273.11e-129PREDICTED: ethylene-responsive transcription factor ERF117-like
RefseqXP_017636044.11e-129PREDICTED: ethylene-responsive transcription factor ERF117-like
TrEMBLA0A2P5WWD21e-129A0A2P5WWD2_GOSBA; Uncharacterized protein
STRINGGorai.008G286700.11e-117(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2072045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.17e-19ERF family protein