PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2454
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 373aa    MW: 40572 Da    PI: 6.5701
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2454genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.8e-32196249255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Gh_A12G2454 196 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 249
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15193250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-29194250IPR009057Homeodomain-like
TIGRFAMsTIGR015578.2E-24196249IPR006447Myb domain, plants
PfamPF002495.2E-7197248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEEKGGFDEQ CMNRIPDLSL HISPPNTAPP SISTATTSES HSSTFDIWSN KQYDALKPCS  60
SSQAAETELS LANPLGPVGS GLEPESCPRQ IHLLKCGQLS DINYGVSWLD DMPEPGLKPI  120
KGIPIYTDPR KSRPLYQVSP YSSYNCSSSS SASAPWVLHS ANGYRFNGIS MPQYEGSMGS  180
SRFIAKVHSK KNIRAPRMRW TSSLHARFVH AVELLGGHER ATPKSVLELM DVKDLTLAHV  240
KSHLQMYRTV KSTDKAAAAF SDGSGEEDED CLGVAKNRNS SVKQRSTETE YSLNGCPSSS  300
NLWTISSTGV QLSSSRTPVG STPEAPSSQS GNHFEGSNSF ADKKITTGSN IDLHNPSLEF  360
SLGRSDWQGE EHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016718242.10.0PREDICTED: probable transcription factor KAN2
TrEMBLA0A1U8LUN80.0A0A1U8LUN8_GOSHI; probable transcription factor KAN2
STRINGGorai.008G292400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17814510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.12e-51G2-like family protein