PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G2573

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 150aa MW: 16884.3 Da PI: 10.4302

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2573	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.1	1.4e-20	32	81	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ l+g Gh_A12G2573 32 LYRGVRQRN-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYMLRG 81 59**998.******965...5********************99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.31E-30	31	91	No hit	No description
SuperFamily	SSF54171	1.57E-22	32	90	IPR016177	DNA-binding domain
SMART	SM00380	1.4E-33	32	95	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.221	32	89	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.5E-31	32	90	IPR001471	AP2/ERF domain
Pfam	PF00847	2.4E-14	33	81	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.9E-12	33	44	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.9E-12	55	71	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MIAATSLQYL NQGLNFLSTK AVSSTAPKPA KLYRGVRQRN WGKWVAEIRL PKNRTRLWLG 60 TFDTAEEAAL AYDKAAYMLR GDFARLSFPH LKHQGAHVSG EFGGFKPLYS FVDAKLQAVC 120 QSLQKQENSA KTSYVFNSKP KVEFDYSVKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-20	30	89	3	63	ATERF1
3gcc_A	1e-20	30	89	3	63	ATERF1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269\|PubMed:9192694}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437484.1	2e-92	PREDICTED: ethylene-responsive transcription factor RAP2-4-like
Swissprot	Q8H1E4	1e-56	RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBL	A0A2P5WDE2	1e-103	A0A2P5WDE2_GOSBA; Uncharacterized protein
STRING	EOX92151	5e-75	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35993	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78080.1	2e-47	related to AP2 4

Publications ? help Back to Top
Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Iwase A, et al. WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]