PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G2578

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 336aa MW: 36309.3 Da PI: 8.8332

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2578	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	9.9e-40	34	92	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk Gh_A12G2578 34 QAALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKL 92 6789****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-26	19	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-33	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.432	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MSPDNPSVKP AAKDENQSSG NRKTGSTRAA QDQQAALKCP RCDSPNTKFC YYNNYSLTQP 60 RHFCKTCRRY WTKGGALRNV PIGGGCRKNK KLKPSSRLSS DSKDSISSSE MGGGLKFFHG 120 LSPAMDFQLG GLSLPRLKPS PPAIYNQFAS FGDTDTPPPA SFTLDPSGSS TSLMGFNNYP 180 LSSLTPGLSG AIQEMGSLNV SSGLASSIES LSSINQDLHW KLQQQRLAML FGGGGENQKE 240 NTITTTACSG PVENQPQKLQ PILFHNLEIS KPEISSVENP RKATTNETAT EWFFGNSYAP 300 VTPTPTTSSN GNDNTTTSNW NGVQAWNDLH HYSTLP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	3e-46	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016712674.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBL	A0A1U8LHM3	0.0	A0A1U8LHM3_GOSHI; dof zinc finger protein DOF5.7-like
STRING	Gorai.008G094000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4950	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	9e-61	Dof family protein