PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2625
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 182aa    MW: 20990.7 Da    PI: 6.3055
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2625genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.88.2e-1281142559
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLe.......aeNkaLkkeleelkkevakl 59 
                  +++rr+++NRe+ArrsR RK++ ++eL    k  +       +eN +Lk+e++ l+ +v  l
  Gh_A12G2625  81 RKQRRMISNRESARRSRMRKQKHLDELLSQLKHVSdchdqvvQENARLKEEASGLRRMVTDL 142
                  79************************998887655111111167777777777777776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-1177141IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.94479142IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.7E-1281139No hitNo description
SuperFamilySSF579593.16E-1181139No hitNo description
PfamPF001703.4E-981143IPR004827Basic-leucine zipper domain
CDDcd147024.68E-1582143No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MVPSELSTEL HYLAPENPIL IPDNLGMMQN TIPGFHFDRF LNIQSDSHIP LPAHEFIAQS  60
LCTSTSDEAE EHQLRRIIDE RKQRRMISNR ESARRSRMRK QKHLDELLSQ LKHVSDCHDQ  120
VVQENARLKE EASGLRRMVT DLRTGSPYSL SLRELEDVPC NTAYLRAEPT NQSIANSVDL  180
LY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193100RRSRMRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016722737.11e-129PREDICTED: basic leucine zipper 43-like
TrEMBLA0A1U8M7E31e-127A0A1U8M7E3_GOSHI; basic leucine zipper 43-like
STRINGGorai.008G174500.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.17e-31basic leucine-zipper 42