PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G2665

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 382aa MW: 42739.7 Da PI: 9.1322

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2665	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.8e-32	201	254	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Gh_A12G2665 201 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 254 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-15	198	254	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-28	199	254	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-23	201	254	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-7	202	253	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MELFPDLSLQ ISPPNPKPTS SCRTREEDMD LGFWKRPLDS RNSISSMAKP DNCIDLSLSN 60 PRISESNSNH LQLLHNGTAN CNGNLFHAYN QNHFPYHHKH LQHPLLYQHQ QQRQQQQQQE 120 LGQELGFLRP IRGIPVYQNP PPPPFPFAQQ PLDSSLASSP SSLASNTINA SSTSLSHFQS 180 QGLMRSRFMS RFPAKRSMRA PRMRWTTTLH ARFVHAVELL GGHERATPKS VLELMDVKDL 240 TLAHVKSHLQ MYRTVKTTDR AAASSGQSDA FENGSSGDTS EDLMMDIQNP RRSEVSVQQG 300 RSSSSSNAYQ DKEYHGLWSN SSREAWLHGK PKDSAGNVPS LQKDMDPKCL SHERVSDGSS 360 SSLSGTSPKK PNLEFTLGVL PH

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MELFPDLSLQ ISPPNPKPTS SCRTREEDMD LGFWKRPLDS RNSISSMAKP DNCIDLSLSN  60
PRISESNSNH LQLLHNGTAN CNGNLFHAYN QNHFPYHHKH LQHPLLYQHQ QQRQQQQQQE  120
LGQELGFLRP IRGIPVYQNP PPPPFPFAQQ PLDSSLASSP SSLASNTINA SSTSLSHFQS  180
QGLMRSRFMS RFPAKRSMRA PRMRWTTTLH ARFVHAVELL GGHERATPKS VLELMDVKDL  240
TLAHVKSHLQ MYRTVKTTDR AAASSGQSDA FENGSSGDTS EDLMMDIQNP RRSEVSVQQG  300
RSSSSSNAYQ DKEYHGLWSN SSREAWLHGK PKDSAGNVPS LQKDMDPKCL SHERVSDGSS  360
SSLSGTSPKK PNLEFTLGVL PH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	202	256	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	202	256	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	202	256	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	202	256	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	202	256	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	202	256	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	202	256	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	202	256	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	202	256	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	202	256	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	202	256	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	202	256	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269\|PubMed:14561401}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243130	0.0	AC243130.1 Gossypium raimondii clone GR__Ba0240C19-hnz, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017634640.1	0.0	PREDICTED: probable transcription factor KAN2
Swissprot	Q9C616	8e-87	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A0B0MAU3	0.0	A0A0B0MAU3_GOSAR; Putative transcription factor KAN2-like protein
STRING	Gorai.008G224400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5387	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-84	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]