PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0020
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 776aa    MW: 90318.9 Da    PI: 7.9988
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0020genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-16571623155
          AP2   1 sgykGV.rwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV ++++ +grW+A+I   +   g +k+ +lg++ t+eeAa+a++ a+++++g
  Gh_A13G0020 571 SKYRGVaSRHHHNGRWEARIGRvF---G-NKYLYLGTYNTEEEAAAAYDMAALEYRG 623
                  89*****99999*******99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030621.6E-37150457IPR004299Membrane bound O-acyl transferase, MBOAT
SMARTSM003800.0065484542IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-6507537IPR016177DNA-binding domain
PROSITE profilePS510329.928507536IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-6507536IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-16571633IPR016177DNA-binding domain
PfamPF008473.9E-11571623IPR001471AP2/ERF domain
CDDcd000181.99E-11571633No hitNo description
SMARTSM003802.1E-24572637IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-17572631IPR001471AP2/ERF domain
PROSITE profilePS5103218.584572631IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MNTSKNNSKS KFKQKQNKVE LLLLILYVIG FYIFCIHRSL RLSRDHFSKL RGLRVGWLFS  60
PARLNDASDD QWRNFRTNLP ILSLVFGIFT LLANIFRKLF RLRARGMSFL WFFLSLIYLS  120
YLHGACILFI FLIASSNFLL VKIFARAKYF TFLLWIFNLG FLFCNRIYQG YSFSIFGEYW  180
EYLDNFRGTF RWHICFNLVV LRMISFGYDY HWAHQESRFD QEKHIQRCHV CKSGKNCYQI  240
LQERNAHMND YTFTTYLSYL VYAPLYIAGP IISFNSFASQ LDVPQNHYSI KEVIWYGLRW  300
VFGLCLMELM THLFYFNAFA TSASWKMLSP MDIFIVGYGV INFMWLKFFL IWRFFRFCSL  360
IAGIEAPENM PKCINNCHDL ESFWKSWHAS FNKWIVRYMY IPLGGSQRKL INIWVIFTFV  420
AVWHDLEWKL LSWAWLTCLF FVPELLVKSA TNAFQAKGAL DGFIFRELRA AGGTITITCL  480
MVANLVGYVI GPSGFSWLIS QFLSKEGAYD SEEDAARTYD LAALKYWGPE TTLNFSVERY  540
GKEIEEMNKV SKEEYLASLR RRSSGFSRGI SKYRGVASRH HHNGRWEARI GRVFGNKYLY  600
LGTYNTEEEA AAAYDMAALE YRGVNAITNF DISHYVERLK EKGILFLDPT PEQSPRSVEV  660
GPIEVEQQPQ QGYEAADEHQ HFQNMQMQLP LCNDNATTMV GTETTDGNEL AWSFCMDSGL  720
TSFFSPEFPN VFDDIGFEDN IDSLFNLGNN KNAVGRKCLS DEASCVEVGD SSTTFL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5860997e-80JX586099.1 Gossypium hirsutum clone NBRI_GE19840 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016745528.10.0PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c
RefseqXP_016745529.10.0PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c
RefseqXP_016745530.10.0PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c
RefseqXP_016745531.10.0PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c
RefseqXP_016745532.10.0PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c
TrEMBLA0A1U8P5E10.0A0A1U8P5E1_GOSHI; putative membrane-bound O-acyltransferase C24H6.01c
STRINGGorai.013G003500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.25e-63ERF family protein