PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G0132

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 172aa MW: 19316 Da PI: 7.4336

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G0132	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.3	3.5e-40	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+r+C+++C++apyf ++++kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPv+G++g i lq+++ ql+++lal++ Gh_A13G0132 11 SCAACKLLKRRCSPNCIFAPYFRSDEAKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVHGCIGAIALLQRKMIQLQHDLALAR 108 6*********************************************************************************************9987 PP DUF260 99 e 99 + Gh_A13G0132 109 A 109 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.51	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-39	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MRGHEPRSTS SCAACKLLKR RCSPNCIFAP YFRSDEAKKF AKVHKVFGAS NVSKILVEVP 60 EEQREDTVNS LAYEAEARLR DPVHGCIGAI ALLQRKMIQL QHDLALARAC LARYVATPSV 120 IFSSDDHHRV ITGPFDDFPV DCGVSFGSFN QNISYELNQE ANMYDFSQIP YI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-44	6	114	6	114	LOB family transfactor Ramosa2.1
5ly0_B	8e-44	6	114	6	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.23316	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016703952.1	1e-127	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	5e-64	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A1U8KNB2	1e-125	A0A1U8KNB2_GOSHI; LOB domain-containing protein 21-like
TrEMBL	A0A2P5XEG6	1e-125	A0A2P5XEG6_GOSBA; Uncharacterized protein
STRING	Gorai.013G016900.1	1e-120	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10255	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-66	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]