PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0188
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 259aa    MW: 28409.1 Da    PI: 9.3737
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0188genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.92.3e-3870130262
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  +ekalkcprC+st+tkfCy+nnyslsqPryfCk+C+ryWt+GGalrnvP+Ggg+r nk+s+
  Gh_A13G0188  70 PEKALKCPRCESTHTKFCYFNNYSLSQPRYFCKTCKRYWTRGGALRNVPIGGGCRTNKRSK 130
                  7899******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3354128IPR003851Zinc finger, Dof-type
PfamPF027012.8E-3272128IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.46374128IPR003851Zinc finger, Dof-type
PROSITE patternPS01361076112IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVFSFVPLID PLNWQQPPTH DQQDQAFTKD NHHHIHNPQL PPPPPAGGGV GINRPGSMTE  60
RARLANIQKP EKALKCPRCE STHTKFCYFN NYSLSQPRYF CKTCKRYWTR GGALRNVPIG  120
GGCRTNKRSK GSKPTKSPSI GQMNPTPLQF PLLLHPLHYL GDYISVGTRA SSNMEFQIGN  180
SSHGDGSMLT NGLVQQFPFL TGLETPTGLY PLGSEGVEAS SYGVHHQLRS KPLESWIAQL  240
EAVSDQYWAG GGGGRGGDA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:10758484}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016665563.11e-163PREDICTED: dof zinc finger protein DOF3.6-like
SwissprotQ9M2U13e-49DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A2P5WK370.0A0A2P5WK37_GOSBA; Uncharacterized protein
STRINGGorai.013G022500.11e-161(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2429034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.18e-44OBF-binding protein 3