PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0273
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 121aa    MW: 13339.1 Da    PI: 8.4737
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0273genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.3e-094667526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                  C++f+ tG+C+yGd+Ck+ H+
  Gh_A13G0273 46 VCNRFLNTGFCQYGDNCKYFHP 67
                 5******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004513.3E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576673.87E-10437No hitNo description
PfamPF062202.1E-9533IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.2864169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-84272IPR000571Zinc finger, CCCH-type
SMARTSM003560.00314368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-84674IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-74667IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTPA ARKRHLQGLQ HLHLYQTSVP PFSKGVCNRF LNTGFCQYGD  60
NCKYFHPNND SRTPNPPLST APAGGVVGNG NGMAISWGNL PPSLKPPPEA GYPPLPFVDW  120
G
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5902231e-46JX590223.1 Gossypium hirsutum clone NBRI_GE25093 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463158.14e-79PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1
SwissprotQ0JP113e-37C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0D2M0A17e-79A0A0D2M0A1_GOSRA; Uncharacterized protein
STRINGGorai.001G184000.11e-79(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-32C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]