PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0274
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 212aa    MW: 23251.1 Da    PI: 5.6274
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0274genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.4e-07333434
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                 ++C+ +++  +++fC  ++  lC++C ++ H
  Gh_A13G0274  3 TICDVCDRAAAIIFCAADEAALCRSCDEKVH 33
                 68******99******************998 PP
2zf-B_box28.92.4e-095291237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                 + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Gh_A13G0274 52 NVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91
                 789***************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.04147IPR000315B-box-type zinc finger
SMARTSM003363.3E-7147IPR000315B-box-type zinc finger
CDDcd000213.55E-5333No hitNo description
PfamPF006435.4E-6342IPR000315B-box-type zinc finger
SMARTSM003365.8E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.0155196IPR000315B-box-type zinc finger
PfamPF006432.2E-75285IPR000315B-box-type zinc finger
CDDcd000212.57E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRTICDVCDR AAAIIFCAAD EAALCRSCDE KVHMCNKLAN RHVRVGLADP SNVPRCDICE  60
NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGR LEEPGLQPLS  120
PDEVRKDLNQ QSKLAVRENR QNRGVSHVPL LDDNAKGDGE VGNELIDLNA RPQQVQGQAS  180
INQEQAMDVS SGNNHDSTSG IPGGSFKQEP EK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.40450.0boll| leaf| ovule
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016697629.11e-156PREDICTED: B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM51e-81BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1U8KAG11e-154A0A1U8KAG1_GOSHI; B-box zinc finger protein 19-like isoform X1
TrEMBLA0A2P5WJI71e-154A0A2P5WJI7_GOSBA; Uncharacterized protein
STRINGGorai.013G032300.11e-150(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-71DBB family protein