PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0280
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 298aa    MW: 32394 Da    PI: 7.0637
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0280genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA572.6e-18230263134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs+C++ kTp+WR gp g ktLCnaCG++y++ +
  Gh_A13G0280 230 CSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGR 263
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.0E-763298IPR016679Transcription factor, GATA, plant
SMARTSM004012.7E-14224278IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-14226287No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14228261IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.332228260IPR000679Zinc finger, GATA-type
CDDcd002022.62E-14229278No hitNo description
PfamPF003203.6E-16230263IPR000679Zinc finger, GATA-type
PROSITE patternPS003440230255IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDLRALKSSV RELTMQNTHH VFDDFLVMNV MNGAVAGEDF SIDCFLDFNN GEFDEGSVEE  60
EEKNSVSTSY QQRVADDGSN SNSTSFTLSV PDDEIAGLEW VSQFVDDSVP EIPLPCPVFK  120
QETDNHAGTR FEAETGPVFV KTPSLSSSVP SKARSKRSKP TVPTWSVGSL PTSESSSSTA  180
SSSSTCSGSS MTSTELANGF GVPPTKKQKK KPVAVQGSGL SSGNPFQRRC SHCQVQKTPQ  240
WRTGPLGAKT LCNACGVRYK SGRLFPEYRP ACSPTFSGDL HSNSHRKVLE MRKGKNWQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.91100.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016697635.10.0PREDICTED: GATA transcription factor 5-like isoform X1
TrEMBLA0A1U8K5400.0A0A1U8K540_GOSHI; GATA transcription factor
STRINGGorai.013G032900.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.27e-49GATA transcription factor 5