PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0285
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SRS
Protein Properties Length: 203aa    MW: 23133.1 Da    PI: 9.1155
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0285genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70287.82.5e-271164255
       DUF702  2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqq 55
                 r+g+++C+dCGn+akk+C ++RCRtCC+s+g++C+th+kstWvpa++r   + q
  Gh_A13G0285 11 RQGSTRCEDCGNKAKKECGFMRCRTCCRSKGYQCQTHIKSTWVPAYRRHRTRPQ 64
                 57899****************************************988543333 PP
2DUF70270.17.1e-227313493154
       DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                  ++++++ le+ ++P+ev s+a f++vrvss++d+++e+a++t+v+i G vfkG+LydqG+++
  Gh_A13G0285  73 RQNPSSGLEVGNFPAEVISPATFQRVRVSSMEDEDDEYAFRTSVNIEGRVFKGLLYDQGPHH 134
                  445677899999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.2E-231466IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.9E-261758IPR006510Zinc finger, lateral root primordium type 1
PfamPF051424.3E-1977133IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.0E-1985132IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MNELRRMMML RQGSTRCEDC GNKAKKECGF MRCRTCCRSK GYQCQTHIKS TWVPAYRRHR  60
TRPQISHNPT RLRQNPSSGL EVGNFPAEVI SPATFQRVRV SSMEDEDDEY AFRTSVNIEG  120
RVFKGLLYDQ GPHHSLGESS SRDQTHLHQQ QPNQIIAADP LTMATTTTTT STTVETLLPF  180
AYASPFNAFM SPSTQFFLHQ PKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694534.11e-153PREDICTED: protein SHI RELATED SEQUENCE 3-like
TrEMBLA0A1U8K1U21e-152A0A1U8K1U2_GOSHI; protein SHI RELATED SEQUENCE 3-like
STRINGGorai.013G033500.11e-128(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91882638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.24e-48SHI-related sequence 7