PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G0330

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 408aa MW: 45457.9 Da PI: 7.2276

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G0330	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.2e-33	260	315	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Gh_A13G0330 260 KQRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 315 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.343	257	317	IPR017930	Myb domain
SuperFamily	SSF46689	4.78E-18	258	318	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-29	259	318	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-27	260	315	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-8	262	313	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MGLVPPELSL DFRPNFVPKT ITNFLRELSL IGNVSDKVSK LDAFVKGLEE EMKKIDAFKR 60 ELPLCMLLLN DAILVLKEES TQCMARNVEP VLEEFIPLKN KEEDNHSEED GSLITTKKEE 120 DCNNDCNNNK DKKNWMSSVQ LWNIDDDYCS SDHKLDTKRN DEDPCKSRGG GGRGFMPFKA 180 NLGFAVRKED KQEVPVHGLT LSTPGIKNLK EESSSTGSRS SCSRAVPFSA TNARMSFRSA 240 PPVGLSNHLQ QHQQQQSGRK QRRCWSPELH RRFVNALQQL GGSQVATPKQ IRELMQVDGL 300 TNDEVKSHLQ KYRLHTRRLP ATTTTTTPAN QSGLVLGGGH AWMCQDQFGE SSKGSSSQSG 360 SPQGPLQLAT NTGGTSTTGC ESMEDDEDAK SECYSWKSHD QKPRKNNV

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MGLVPPELSL DFRPNFVPKT ITNFLRELSL IGNVSDKVSK LDAFVKGLEE EMKKIDAFKR  60
ELPLCMLLLN DAILVLKEES TQCMARNVEP VLEEFIPLKN KEEDNHSEED GSLITTKKEE  120
DCNNDCNNNK DKKNWMSSVQ LWNIDDDYCS SDHKLDTKRN DEDPCKSRGG GGRGFMPFKA  180
NLGFAVRKED KQEVPVHGLT LSTPGIKNLK EESSSTGSRS SCSRAVPFSA TNARMSFRSA  240
PPVGLSNHLQ QHQQQQSGRK QRRCWSPELH RRFVNALQQL GGSQVATPKQ IRELMQVDGL  300
TNDEVKSHLQ KYRLHTRRLP ATTTTTTPAN QSGLVLGGGH AWMCQDQFGE SSKGSSSQSG  360
SPQGPLQLAT NTGGTSTTGC ESMEDDEDAK SECYSWKSHD QKPRKNNV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-14	260	313	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-14	260	313	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-14	260	313	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-14	260	313	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20094	0.0	boll\| ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964612	2e-60	JX964612.1 Gossypium hirsutum clone NBRI_TRANS-881 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016675005.1	0.0	PREDICTED: uncharacterized protein LOC107894253 isoform X1
TrEMBL	A0A1U8I9W4	0.0	A0A1U8I9W4_GOSHI; uncharacterized protein LOC107894253 isoform X1
STRING	Gorai.013G040600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14535	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-46	G2-like family protein