PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G0344

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 259aa MW: 30032.5 Da PI: 7.2378

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G0344	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.9	6.3e-12	116	200	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v+ +l f++++ ++ ++++tl de+g+++ k+ +k++ l++GW++F +++L +gD +vF+l+ +ef +v ++r Gh_A13G0344 116 FVKPMLQSHVTGGFWL-----FCKQNL--PHHDVMVTLVDEEGEEFVTKYLADKTG----LSGGWRGFSIDHNLVDGDALVFQLVAPTEF--KVYIIR 200 5566666666655533.....465552..345689*************666666....*********************9986777..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.1E-16	108	201	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-20	109	201	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.97E-22	114	200	No hit	No description
Pfam	PF02362	5.3E-10	116	201	IPR003340	B3 DNA binding domain
SMART	SM01019	4.4E-13	116	202	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.109	144	202	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MRTISDFQNR GNRNSNLKFK TLGPYKIQIT QAKPRTPRKQ VELTAVRRSS RVADKPKPDY 60 KDVPLEPFER LRRGYNRGHS HRDLFNRVYA SAEERAYAIE RAEHLESTLD SEYPSFVKPM 120 LQSHVTGGFW LFCKQNLPHH DVMVTLVDEE GEEFVTKYLA DKTGLSGGWR GFSIDHNLVD 180 GDALVFQLVA PTEFKVYIIR AYESDDNGGG EDEKGGEDGR EEEKREDEKE EKRKDGDKEA 240 DVEPDVQNRR SKRIRARKW

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX623188	2e-93	JX623188.1 Gossypium hirsutum clone NBRI_GE70273 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017619312.1	1e-140	PREDICTED: B3 domain-containing protein At3g19184-like isoform X3
Swissprot	Q1G3M3	6e-69	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A2P5XPV6	1e-143	A0A2P5XPV6_GOSBA; Uncharacterized protein
STRING	Gorai.013G042700.1	1e-138	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-58	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]