PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0435
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 312aa    MW: 33444.2 Da    PI: 5.4809
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0435genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.4e-16222258135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  Cs+Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  Gh_A13G0435 222 CSHCGISSkkTPMMRRGPAGPRTLCNACGLKWANKGV 258
                  *****88888************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.63382117IPR010399Tify domain
SMARTSM009791.8E-1182117IPR010399Tify domain
PfamPF062001.3E-1285116IPR010399Tify domain
PfamPF062033.4E-16149191IPR010402CCT domain
PROSITE profilePS5101713.146149191IPR010402CCT domain
SMARTSM004011.4E-12216269IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.959216273IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.99E-12219268No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15221263IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-13222258IPR000679Zinc finger, GATA-type
PROSITE patternPS003440222249IPR000679Zinc finger, GATA-type
CDDcd002024.21E-16222271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MANSNLHSIS LYGSGAMNMQ RNPEEEEEED VPGGGGEESV DNPQIGYQES DGRAVTVMNN  60
GMEEASHANL YGQGSDLTAV QGNSSADQLT LSFQGEVYVF DSVSPDKVQA VLLLLGGYEI  120
PLGIPALAAT PIAQRGMGDF PGRSIQPHRA ASLNRFREKR KERCFDKKIR YTVRKEVALR  180
MQRKKGQFTS AKAISDEVAS ASSGWSGTPG FGQDESMQET LCSHCGISSK KTPMMRRGPA  240
GPRTLCNACG LKWANKGVLR DLSKVSMVAI QDPTAKTTEQ SDAEANESEA VTGTAVVVSS  300
SNRDNSGVTS ER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.38590.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5274147e-78HQ527414.1 Gossypium herbaceum clone NBRI_C_EYT27PB01BMJAL simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016674876.10.0PREDICTED: GATA transcription factor 28-like
SwissprotQ8H1G01e-78GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A1U8I9I50.0A0A1U8I9I5_GOSHI; GATA transcription factor 28-like
STRINGGorai.013G055000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-79ZIM-LIKE 2